Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 198 a.a., RNA polymerase sigma-70 factor from Bacteroides ovatus ATCC 8483

 Score = 81.3 bits (199), Expect = 1e-20
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 3   ERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLK 62
           E E + A+K G  +AF  +Y  Y++ +   +R Y+     +E IV+D+   LWE+R  + 
Sbjct: 6   ETEIIEALKSGKEEAFRYIYKTYYTDLCRIARGYLTDSYLSESIVEDLVYSLWENRSKIT 65

Query: 63  EDENIKGFLFIVTRNIVFNKNKKRV--NENLFKTSVLVAYGNEGYYNSTTVEEDYCASQL 120
            + ++K +LF    N   N  +      E    +  LV Y +        VE      +L
Sbjct: 66  INTSLKNYLFRSVANKCINYLQLEYVRRETACSSEDLVIYSDLWSLGENPVEH-LEGKEL 124

Query: 121 KIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVK 179
              I + I+ L  + RK FLLSR E+   +EIAE +GI+  TV+ HM  AL  LK+  K
Sbjct: 125 HSIIQKTIDGLSPETRKVFLLSRFENKRQEEIAEIMGITIHTVKYHMRSALDKLKEAAK 183