Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 188 a.a., RNA polymerase sigma-70 factor from Bacteroides ovatus ATCC 8483

 Score = 84.7 bits (208), Expect = 9e-22
 Identities = 46/180 (25%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 1   MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHL 60
           ++E + +  ++ G +QAF  +Y  Y  ++Y F    +   +  ++IVQD F++LW++R+ 
Sbjct: 3   IDEIQCIKELRNGSYQAFTQIYEAYADRLYSFVLKQLKNRSLTQDIVQDTFLRLWDNRNQ 62

Query: 61  LKEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQL 120
           L    N++ F+F + ++ V +  +K+VNE  F+  +      E      + E+     + 
Sbjct: 63  LNSFGNLQAFIFTIAKHQVIDYFRKQVNELQFEDFMEYC---ENQATDVSPEDILLYDEF 119

Query: 121 KIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVKR 180
              + +    L +++ + + LSRE+ +  K+IAE+L +S++TV+ ++  ALK L+ ++ +
Sbjct: 120 LQQLQQSKKVLSQREHEIYELSREKHIPIKQIAEQLDLSEQTVKNYLTSALKILRSEMMK 179