Pairwise Alignments

Query, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score =  137 bits (345), Expect = 6e-37
 Identities = 96/314 (30%), Positives = 152/314 (48%), Gaps = 6/314 (1%)

Query: 55  TIRGRQDIDIYPQVSGTIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAARAA 114
           T+     +++  +V+G + K+   EGQ+V+ G LL  ID  PYR AL+ A   +   +A 
Sbjct: 86  TVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQNQAQ 145

Query: 115 TSTAELTYKSNKELYAQKVVSEFSLKTAENSYLTAKAQLAQAEAQEISARNNLSYTEVKS 174
              A++     K LYA+  +++ +L TAE      +  +   +AQ   AR NL +T++++
Sbjct: 146 LKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKTNQAQVNDARLNLDFTQIRA 205

Query: 175 PSDGVVGALPYRAGALVSANIPYPLTTVSDNSDMYVYFSMTENQLLALTRQYGDMDEALK 234
           P  G VG      G LV+AN    L  ++    + V F++ E +L  +  +Y     +  
Sbjct: 206 PISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLPETELSTVLERY----RSGA 261

Query: 235 NMPEVELILNDNSVYQKKGTIESISGVIDRQTGTVVARVVFPNESRLLHSGASGTV-VVP 293
           ++P VE     +S  Q  G + SI   ID  TGT+  +  F N+   L       V ++ 
Sbjct: 262 SLP-VEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFVNVRLLA 320

Query: 294 SIYKNCIAIPQTATVRMQDKTIVYKVVDGKAVSTLITVAGINDGREYVVLDGLKAGDEIV 353
              K  +  P  A     D T  Y V +   V+      G +DG   V+LDGLKAGD +V
Sbjct: 321 DTLKQVVMAPAAAIQFGNDGTFAYVVNEQSTVNVRKLKVGASDGENSVILDGLKAGDRLV 380

Query: 354 SEGAGLVREGTQVK 367
            EG   +REGT+V+
Sbjct: 381 LEGTDRLREGTKVE 394