Pairwise Alignments

Query, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 385 a.a., multidrug transporter subunit MdtE from Escherichia coli ECRC62

 Score =  127 bits (320), Expect = 4e-34
 Identities = 103/371 (27%), Positives = 162/371 (43%), Gaps = 8/371 (2%)

Query: 4   VNKKWIRLIGIVGCTVWMASC--KQAPDAGVKS-SYAVMQIEPTDKELSSSYSATIRGRQ 60
           +N++   LI ++ C   + +C  K A +A   +    V+ + P    + S         +
Sbjct: 1   MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYE 60

Query: 61  DIDIYPQVSGTIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAARAATSTAEL 120
             +I PQV G I K    EG KV +G  L+ ID  P +A L +A  ++  A +  S A +
Sbjct: 61  VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARI 120

Query: 121 TYKSNKELYAQKVVSEFSLKTAENSYLTAKAQLAQAEAQEISARNNLSYTEVKSPSDGVV 180
           T+     L     VS     TA      A+A +  A+A    A  NL Y  V SP  GV 
Sbjct: 121 TFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVS 180

Query: 181 GALPYRAGALVSANIPYPLTTVSDNSDMYVYFSMTENQLLALTRQY--GDMDEALKNMPE 238
           G      GALV+AN    L TV     +YV  + +    L +  +   G + +   + P 
Sbjct: 181 GKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTP- 239

Query: 239 VELILNDNSVYQKKGTIESISGVIDRQTGTVVARVVFPNESRLLHSGASGTVVV-PSIYK 297
           V+L L +   Y + GT++     +D  TG+V  R +FPN +  L  G   T +V     +
Sbjct: 240 VQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQ 299

Query: 298 NCIAIPQTATVRMQDKTIVYKVVDGKAVSTLITV-AGINDGREYVVLDGLKAGDEIVSEG 356
           N + +PQ              ++D   V  L  + A    G ++VV  GL+AGD ++  G
Sbjct: 300 NVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSG 359

Query: 357 AGLVREGTQVK 367
              +R G + +
Sbjct: 360 LQRIRPGIKAR 370