Pairwise Alignments

Query, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  314 bits (804), Expect = 3e-90
 Identities = 160/360 (44%), Positives = 241/360 (66%), Gaps = 2/360 (0%)

Query: 10  RLIGIVGCTVWMASC-KQAPDAGVKSSYAVMQIEPTDKELSSSYSATIRGRQDIDIYPQV 68
           R++    C   ++SC  +  D G    YAV +++ T   L  +Y ATI+GRQD++I PQV
Sbjct: 4   RIVFFAFCLALLSSCGNKGNDTGKVPEYAVQELQKTTANLMKAYPATIKGRQDVEIRPQV 63

Query: 69  SGTIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAARAATSTAELTYKSNKEL 128
           SG I KLCV EG  VR+GQLLFIID   Y AA++TA A+V  A AA +T ++T  +  EL
Sbjct: 64  SGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATAEAAVNTQQMTVDNKIEL 123

Query: 129 YAQKVVSEFSLKTAENSYLTAKAQLAQAEAQEISARNNLSYTEVKSPSDGVVGALPYRAG 188
             ++++S++ L  A+NS   A+AQLAQA+AQ  +A+ N S+T+VKSPSDGV+  +PYR G
Sbjct: 124 NKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQVKSPSDGVINDIPYRLG 183

Query: 189 ALVSANIPYPLTTVSDNSDMYVYFSMTENQLLALTRQYGDMDEALKNMPEVELILNDNSV 248
           ALVS ++  P+TTVS+  ++YVYFS TE +LLA+T+  G + E +  +P ++L L D + 
Sbjct: 184 ALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTKTGGTIKEEISKIPAIKLQLIDGTT 243

Query: 249 YQKKGTIESISGVIDRQTGTVVARVVFPNESRLLHSGASGTVVVPSIYKNCIAIPQTATV 308
           Y  +G +++I+GVID+ TG+V  R +FPN+  +L SG +  V++P   +N I+IPQ+ATV
Sbjct: 244 YDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTANVLIPYNMENVISIPQSATV 303

Query: 309 RMQDKTIVYKVVDGKAVS-TLITVAGINDGREYVVLDGLKAGDEIVSEGAGLVREGTQVK 367
            +QDK  VY +     V  T I +  +++G+EY+V  GL  GD+IV EG   +++G +++
Sbjct: 304 EIQDKKFVYVLQPDNTVKYTEIGIFNLDNGKEYLVTSGLNPGDKIVIEGVQSLKDGQKIQ 363