Pairwise Alignments

Query, 782 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 867 a.a., type I DNA topoisomerase from Dickeya dianthicola 67-19

 Score =  403 bits (1036), Expect = e-116
 Identities = 246/617 (39%), Positives = 350/617 (56%), Gaps = 77/617 (12%)

Query: 1   MQKNLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDL----------------------- 37
           M K LVIVESPAKAKTI K+LG DF V SS GH+RDL                       
Sbjct: 1   MGKALVIVESPAKAKTINKYLGNDFVVKSSVGHVRDLPTSGSGSASKKSAEANGEKAKKA 60

Query: 38  -KKKE-------FSIDVDKNFKPDYEIPADKKALVSTLKAEAKEAETVWLASDEDREGEA 89
            KK E         +D  + ++  YEI   K+ +VS LKA A+ A+ V+LA+D DREGEA
Sbjct: 61  VKKDEKTALVNRMGVDPYRGWQAHYEILPGKEKVVSELKALAQNADHVYLATDLDREGEA 120

Query: 90  IAWHLYEVLKLKPENTKRIVFHEITKGAILKAIEQPRNIDLNLVNAQQARRILDRIVGFE 149
           IAWHL E++    +   R+VF+EITK AI +A E P  +++N VNAQQARR +DR+VG+ 
Sbjct: 121 IAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFENPGELNINRVNAQQARRFMDRVVGYM 180

Query: 150 LSPVLWRKVKPSLSAGRVQSVAVRLIVEREREIHAFKSEAAYRVIAIFLVPDTDGKLVEM 209
           +SP+LW+K+   LSAGRVQSVAVRL+VEREREI AF  E  + + A  L        +++
Sbjct: 181 VSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLANPEIALQMQV 240

Query: 210 KAELSRRIKTKEEA--KAFLDACKGATFTIEDITTRPVKKTPPAPFTTSTLQQEAARKLG 267
                +  +   +A  +A +   + A + + +   +P    P APF TSTLQQ A+ +LG
Sbjct: 241 THHNGKPFRPVNQAQTQAAVSLLEKARYVVAEREDKPTSSKPGAPFITSTLQQAASTRLG 300

Query: 268 YTVAQTMMIAQRLYESGFITYMRTDSVNLSEYATASSKDAIIQMMGERYV-HPRHFETKT 326
           + V +TMM+AQRLYE+G ITYMRTDS NLS+ A   ++D I    G+RY+    +  T  
Sbjct: 301 FGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMARDYIHDEFGKRYLPEAANLYTSK 360

Query: 327 KGAQEAHEAIRPTYME---NQSIEGTAQEKKLYDLIWKRTIASQMADAELEKTTATISIS 383
           + +QEAHEAIRP+ ++   +Q  +  A  +KLY LIW++ +A QM  A+ + TT  +S  
Sbjct: 361 ENSQEAHEAIRPSDVKVQADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVS-- 418

Query: 384 KSGD-AFTAIGEVIKFDGFLRVYRESYDDENEQEDESRLLPPLKKGQKLEYGPIVATERF 442
            +GD    A G  ++FDG+ +V          + DE R LP +  GQ L    ++ ++ F
Sbjct: 419 -AGDYQLRAKGRTLRFDGWTKVM-----PALRKGDEDRTLPVIDVGQSLSLEKLLPSQHF 472

Query: 443 TQRPPRYTEASLVRKLEELGIGRPSTYAPTISTIQQREYVEKGNKDGEERTFNVLTLKDN 502
           T+ P RY+EASLV++LE+ GIGRPSTYA  ISTIQ R YV                    
Sbjct: 473 TKPPARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVR------------------- 513

Query: 503 QIKDESHNEVTGAEKSKLFPTDTGTVVNDFLTEYFPDILDYNFTASVEKEFDEIAEGEVK 562
                        E  + +    G +V D L + F ++++Y+FTA +E   D +A  + +
Sbjct: 514 ------------VENRRFYAEKMGEIVTDRLEDNFRELMNYDFTARMENRLDLVANSQAE 561

Query: 563 WTSIMKTFYDQFHPAVE 579
           W  ++  F+ +F   +E
Sbjct: 562 WKGVLDEFFAEFSKQLE 578