Pairwise Alignments

Query, 604 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 857 a.a., DNA mismatch repair protein MutS from Pseudomonas putida KT2440

 Score = 77.4 bits (189), Expect = 2e-18
 Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 9/249 (3%)

Query: 355 AHSADLPRWIEAIGAIDAYCSLATFSYNHPDYIYPQITSQSFHLQAEALGHPLMNR---N 411
           +H A L     A+  +D   +LA  + N  D   P+   +   L+ E   HP++ +    
Sbjct: 536 SHLAPLQDSAAALAELDVLSNLAERALNL-DLNCPRFVDEPC-LRIEQGRHPVVEQVLTT 593

Query: 412 KCVRNGIDMEKRPFFIIITGANMAGKSTYLRTVGVNYLLACIGAPVWAAKMEI-FPARLV 470
             V N + ++     +IITG NM GKSTY+R   +  LLA IG+ V AA  E+    R+ 
Sbjct: 594 PFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIF 653

Query: 471 TSLRTSDSLTDNESYFFAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALI 530
           T + +SD L    S F  E+     I+    A +   +++DE+ +GT++ D    ++A  
Sbjct: 654 TRIGSSDDLAGGRSTFMVEMSETANILH--NATDRSLVLMDEVGRGTSTFDGLSLAWAAA 711

Query: 531 KQFMSMDANGIIATHDLLLGTLIDAFPQNIRNYCFEADITNNELTFSYQMRSGVAQNMNA 590
           ++   + A  + ATH   L  L ++ P  + N    A   N  + F + +  G A     
Sbjct: 712 ERLAQLRAYTLFATHYFELTVLPESEPL-VANVHLNATEHNERIVFLHHVLPGPASQSYG 770

Query: 591 CFLMKKMGI 599
             + +  G+
Sbjct: 771 LAVAQLAGV 779



 Score = 32.3 bits (72), Expect = 8e-05
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 123 DLDIFG--EHSLFQYINRTSTPIGKQRLANWFNAHLEEKEAIEQRQEAIRELSSELEFRQ 180
           D+++ G  +++L   I+R  T +  + L+ W N  L + + ++ RQ++IR L     F +
Sbjct: 277 DINLAGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQARQDSIRCLLDSYRFEK 336