Pairwise Alignments

Query, 604 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 851 a.a., DNA mismatch repair protein MutS from Serratia liquefaciens MT49

 Score = 72.0 bits (175), Expect = 1e-16
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 18/251 (7%)

Query: 356 HSADLPRWIEAIGAIDAYCSLATFSYNHPDYIYPQITSQSFHLQAEALGHPLMNR---NK 412
           H  +L +   A+  +D   +LA  +    +Y  P ++ Q      E   HP++ +     
Sbjct: 538 HLGELQQSAAALAELDVLANLAERAETL-NYACPTMSEQPGVRITEGR-HPVVEQVLSEP 595

Query: 413 CVRNGIDMEKRPFFIIITGANMAGKSTYLRTVGVNYLLACIGAPVWAAKMEIFPA-RLVT 471
            + N + +  +   +IITG NM GKSTY+R   +  L+A IG+ V A+K  I P  R+ T
Sbjct: 596 FISNPLSLSPQRRMLIITGPNMGGKSTYMRQTALIVLMAHIGSYVPASKAVIGPVDRIFT 655

Query: 472 SLRTSDSLTDNESYFFAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALIK 531
            +  +D L    S F  E+     I+    A E   +++DEI +GT++ D    ++A  +
Sbjct: 656 RVGAADDLASGRSTFMVEMTETANILH--NATEHSLVLMDEIGRGTSTYDGLSLAWACAE 713

Query: 532 QFMS-MDANGIIATHDLLLGTLIDAFPQNIRNYCFEADITNNELTFSYQMRSGVAQNMNA 590
              S + A  + ATH   L TL +   + + N   +A    + + F + ++ G A     
Sbjct: 714 NLASRIKAMTLFATHYFELTTLPEKM-EGVVNVHLDALEHGDTIAFMHSVQDGAAS---- 768

Query: 591 CFLMKKMGIAV 601
               K  G+AV
Sbjct: 769 ----KSYGLAV 775