Pairwise Alignments

Query, 604 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 864 a.a., DNA mismatch repair protein MutS from Kangiella aquimarina DSM 16071

 Score = 73.9 bits (180), Expect = 3e-17
 Identities = 130/554 (23%), Positives = 220/554 (39%), Gaps = 76/554 (13%)

Query: 84  DYLKKKIEINQQELRALQ-YDFSDFDNGKEYIDPSHLYTFDL--DIFGEHS--LFQYINR 138
           DY K     N   +R LQ  + SD    +  +DP+     +L  +I G HS  LF+ +N 
Sbjct: 247 DYAKATQLNNLPHIRLLQKLEHSD----QLVLDPATRRNLELTENIQGGHSNTLFEVMNS 302

Query: 139 TSTPIGKQRLANWFNAHLEEKEAIEQRQEAIRELSSELEFRQQFRLLG------------ 186
           T T +G + L    +  L     +++R +++  L  +  F     +L             
Sbjct: 303 TQTVMGARLLKRCLHTPLRNHANVQKRLDSVENLIHDHAFISIQPILAEVADIERIVTRI 362

Query: 187 LLYKGKPSDTSEIKEWVNSPSDYRKHAFLRILPTAVGIINLLCIGATILGFLPASISGIV 246
            L    P D   +++ +   S         +L   +  +N+    A  +  LP +I  ++
Sbjct: 363 ALASANPRDLKRLQQGLTQSS---------LLLEELNQLNISLDQAQNIEPLP-NIQQLL 412

Query: 247 FACFVVFSFIFSKGITKIQATYGEKLQILSTYADQ----ILITEKKEMHSPALQQLKAEL 302
               V    +  +    I   Y  +L  L + AD     +L  E++E     +  LK   
Sbjct: 413 ERALVEQPPMVIRDGGVIAEGYNTELDELRSLADDANEFMLALEQREKEESGINTLKVGY 472

Query: 303 T-----------SQNQTASQSVHRLAKLMNA-------LDQRGNLLMSTILNGLLFWELR 344
                       +Q+  A     R   L NA       L +    ++++    L   E R
Sbjct: 473 NKVHGFYIEISRAQSHQAPVRYIRRQTLKNAERFITPELKEYEEKVLTSKTRALAL-EKR 531

Query: 345 QVMQIEKWKEAHSADLPRWIEAIGAIDAYCSLA----TFSYNHPDYIYPQITSQSFHLQA 400
              ++ +  + H A++     AI  ID     A       +N P        S +  L  
Sbjct: 532 LYDELIQELQKHVAEIQSTASAIAEIDVLACFAERATNLGFNRP------ALSNNEGLTI 585

Query: 401 EALGHPLM---NRNKCVRNGIDMEKRPFFIIITGANMAGKSTYLRTVGVNYLLACIGAPV 457
           +   HP++   ++   + N + +  +   +IITG NM GKSTY+R   +  LLA IG+ V
Sbjct: 586 KQGRHPVVEFHSKEPFIPNDLTINNQERSLIITGPNMGGKSTYMRQTALITLLAYIGSYV 645

Query: 458 WAAKMEIFPA-RLVTSLRTSDSLTDNESYFFAELKRLKLIIDKLKAGEELFIILDEILKG 516
            A   EI P  R+ T +  SD L    S F  E+     I++   A     I+LDEI +G
Sbjct: 646 PADAAEIGPIDRIFTRIGASDDLASGRSTFMVEMSETANILN--NATSNSLILLDEIGRG 703

Query: 517 TNSMDKQKGSFALIKQF-MSMDANGIIATHDLLLGTLIDAFPQNIRNYCFEA----DITN 571
           T++ D    + A I+     + +  + ATH   L    + +   + N  F A    D   
Sbjct: 704 TSTFDGLALASATIQYIHEKLQSYTLFATHYFELTQQAEQWDAMV-NLHFSATEHKDGGQ 762

Query: 572 NELTFSYQMRSGVA 585
           ++L FS+Q++ G A
Sbjct: 763 DKLIFSHQIQPGPA 776