Pairwise Alignments

Query, 586 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 815 a.a., DNA topoisomerase III from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  300 bits (769), Expect = 1e-85
 Identities = 200/612 (32%), Positives = 309/612 (50%), Gaps = 50/612 (8%)

Query: 1   MIAILTDKPNVGKEIARILGAHTREDGYMSGNGYMVTWTFGNMLSLAMPKDYGMDRPERG 60
           M   + +KP+V +EIA ++GA  ++DGY  GNGY VTWTFG+  +L  P DY  +     
Sbjct: 1   MKVCIAEKPSVAREIAMVIGAKAKKDGYYEGNGYQVTWTFGHFCTLREPDDYRPEWKRWS 60

Query: 61  DFPINPAPFRLMVKHIKTDTGWIPDINAVLQLKVIEKVFDACESIIAATDASREGEMVFR 120
            + +   P +  +K +K       D     Q K+I+++ D  E +I   DA +EGE++ R
Sbjct: 61  LYDLPMLPEKYGIKLMK-------DSGVQKQFKIIKQLLDKAEEVINCGDAGQEGEVIQR 113

Query: 121 YLYRYLECRKSYRRLWISSLTDEAVLEGMDNLRPGSLYDHMFLAADSRNKADWVLGLNAS 180
           ++    + RK ++RLWISSLT+EA+ +G   LR G+ +D ++ A  SR   DW+LGLNA+
Sbjct: 114 WVLTEAKYRKPFKRLWISSLTEEAIRQGFAKLREGAEFDSLYQAGKSRAIGDWLLGLNAT 173

Query: 181 --YALCQATGTGNN-SLGRVQTPILAAISSRYRERENHIATDTFPVFISLCKNNTLLKMR 237
             + L  A G+    S+GRVQTP LA + +R+ E  N +    F    +L ++ T     
Sbjct: 174 RLFTLKYANGSRQTLSIGRVQTPTLAMLVNRHHEIANFV-PQPFWELKTLYRDTTF--SS 230

Query: 238 CTEEFTDREAAARLYSDCKLAGHARVTAVSRQVREIEPPALYNLTELQKDANNYYGMTAG 297
               F   E A ++    + A    +T V  +     PP L++LT LQ + NN   ++A 
Sbjct: 231 TNGRFQKEEEALKIMEAIREA-ELTITDVETKKGTEAPPKLFDLTSLQIECNNKLSLSAD 289

Query: 298 KSLEIAQKLYEKKLISYPRTAGRFLPRDVYDKLPRIMEKILN-RKEFRPYVRSMGINIFD 356
           ++L+  Q LYEKK++SYPR    FLP D+Y K+P I++ + N  +E  P ++    N   
Sbjct: 290 ETLKTVQSLYEKKVVSYPRVDTTFLPDDIYPKIPGILQGLSNYSQEVAPLLQ----NKIR 345

Query: 357 LPDKVVDEGQAAEHHAIIITDTYPEGLNREEMQLYMMIIGRMLEAFMPVCRAEYTTVDAV 416
              KV +  +  +HHAII T     GL   E  +Y +I  R + AF P C    TTV A 
Sbjct: 346 KTKKVFNNNKVTDHHAIIPTGAAAGGLYGREADVYDIITRRFIAAFYPDCIVSNTTVMAE 405

Query: 417 CAARNFRCHACRIIEKGWFGIFERESV--------IAGREYGFSPIPQLENGETAAVTGC 468
            A   F+    +I++ GW  I+  E V            E     +P  E GE       
Sbjct: 406 SAGYTFKVRGKQILDPGWRVIYGAEDVKSEPTGKDAKEEEEAAGVLPHFEKGEHGPHE-- 463

Query: 469 SLIHRKDLT-VSAYTDAELITYMDTA----------------GLGTAATRTGILQTLIDR 511
            L+ +K       YT+A L+  M+TA                G+G  +TR  I++TL  R
Sbjct: 464 PLLEKKMTNPPKEYTEATLLRAMETAGKQVEDEELKDALKENGIGRPSTRAAIIETLFKR 523

Query: 512 KYVRYSGKYIIPTRKGLYIYETVRNMKIAETALTSGWEAQLARMERGKLTQEEFMKG--- 568
           +Y+R   K I+PT+ G+ +   +RN  +    +T  WE +L ++E G+   E F++    
Sbjct: 524 QYIRKDKKKIVPTQMGIDLIGVIRNETLKSAEMTGQWERKLRQIEGGEFKAEAFLQELQE 583

Query: 569 -VLKLSREVTED 579
            V+ L +EV  D
Sbjct: 584 FVMNLVQEVKYD 595