Pairwise Alignments

Query, 586 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 780 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  279 bits (713), Expect = 3e-79
 Identities = 182/606 (30%), Positives = 297/606 (49%), Gaps = 44/606 (7%)

Query: 1   MIAILTDKPNVGKEIARILGAHTREDGYMSGNGYMVTWTFGNMLSLAMPKDYG--MDRPE 58
           M   + +KP+V +EIA+++GA  R+DGY  GNGY VTWTFG+  SL  P+DY     R +
Sbjct: 1   MKVCIAEKPSVAREIAQVIGAKNRKDGYFEGNGYQVTWTFGHFCSLYPPEDYDPTWKRWD 60

Query: 59  RGDFPINPAPFRLMVKHIKTDTGWIPDINAVLQLKVIEKVFDACESIIAATDASREGEMV 118
               P+ P  F         +T  IPD     Q K+I  + +  + +I   DA +EGE++
Sbjct: 61  LYTLPMLPKRF---------ETKIIPDNGVKKQFKIIRDLVNKAQVVINCGDAGQEGELI 111

Query: 119 FRYLYRYLECRKSYRRLWISSLTDEAVLEGMDNLRPGSLYDHMFLAADSRNKADWVLGLN 178
            R++ +    + + +RLWISSLT E++  G +NL+P   +D+++ A  SR   DW+LG+N
Sbjct: 112 QRWVLKQANYQGAVQRLWISSLTTESIQAGFENLKPAEEFDNLYYAGSSRAIGDWLLGMN 171

Query: 179 AS--YALCQATGTGNNSLGRVQTPILAAISSRYRERENHIATDTFPVFISLCKNNTLLKM 236
           A+  Y L         S+GRVQTP LA + +R++E E     + +    +  ++ T    
Sbjct: 172 ATRLYTLKYGGYKQVLSIGRVQTPTLAMLVNRHQEIE-QFKPEPYWELQTTYRDTT---F 227

Query: 237 RCTE-EFTDREAAARLYSDCKLAGHARVTAVSRQVREIEPPALYNLTELQKDANNYYGMT 295
             TE +F  +E    L           +TA+ ++  +   P L++LT LQ   NN + +T
Sbjct: 228 HSTEGKFLKKEDGEALLGQI-TGKDLFITAIDQKEGKEYAPKLFDLTSLQVYCNNKFNLT 286

Query: 296 AGKSLEIAQKLYEKKLISYPRTAGRFLPRDVYDKLPRIMEKILNRKEFRPYVRSMGINIF 355
           A  +L+  Q+LYE K+++YPR    FLP D+Y K+  I++ +    ++  +   +     
Sbjct: 287 ADNTLKTVQRLYELKVVTYPRVDTTFLPNDMYPKISGILKGL---GQYHSFTAPLLAKKI 343

Query: 356 DLPDKVVDEGQAAEHHAIIITDTYPEGLNREEMQLYMMIIGRMLEAFMPVCRAEYTTVDA 415
               KV ++ +  +HHAII T    + L   E ++Y +I+ R L AF P C+   T V  
Sbjct: 344 RKSPKVFNDKKVTDHHAIIPTGEEKQ-LGHTEQKVYDIIVRRFLAAFYPDCKVAKTQVTG 402

Query: 416 VCAARNFRCHACRIIEKGWFGIF------ERESVIAGREYGFSPIPQLENGETAA----- 464
                 F      I+E+GW  +F      E++   +  +     +P  E GE        
Sbjct: 403 EIEQTTFLAKGKEILEEGWRALFAKDNKKEKDDGDSKEDEEEGILPTFEKGEHGPHHPTL 462

Query: 465 ----------VTGCSLIHRKDLTVSAYTDAELITYMDTAGLGTAATRTGILQTLIDRKYV 514
                      T  SL+   +       D EL   M   G+G  +TR  I++TL  RKY+
Sbjct: 463 KEKITKPPKNYTEASLLRAMETAGKQVEDDELRDLMKANGIGRPSTRASIIETLFRRKYI 522

Query: 515 RYSGKYIIPTRKGLYIYETVRNMKIAETALTSGWEAQLARMERGKLTQEEFMKGVLKLSR 574
               K ++PT  G+ +  T++N  +    LT  WE QL  +E G  +  +F+  + K+  
Sbjct: 523 ERRKKLVVPTEMGIQLIGTIQNELLKSAELTGQWEKQLKEIEEGAFSAIQFIANMKKMVA 582

Query: 575 EVTEDI 580
           E+  ++
Sbjct: 583 ELVSEV 588