Pairwise Alignments

Query, 445 a.a., putative outer membrane efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 454 a.a., efflux transporter outer membrane subunit from Serratia liquefaciens MT49

 Score = 81.3 bits (199), Expect = 6e-20
 Identities = 89/392 (22%), Positives = 173/392 (44%), Gaps = 32/392 (8%)

Query: 20  SVQAQDTTPQTWT------LRQCIDYAIEHNIDIRQTANEAEQNKISVNTAKWARLPNLN 73
           + +A  + P  W       L + +   +  N D+   A    + +++   A     P++N
Sbjct: 41  NAEADTSEPFNWRDFRDPQLDRWLQQVMAANNDLAAAALRVYRAQLAAQRADIGTAPSVN 100

Query: 74  GGISQGWSWGRTASPKDNSYSDTNSSSTGVNLSTNVPLFTGLQLSNQYSLAKLNLQAAIE 133
             +S G     TA    ++++ ++S++ GV  S  V L+   +L+ Q   A+   QA  +
Sbjct: 101 ATLSSG---ANTALSGSSAWNKSSSANLGV--SYEVDLWG--KLARQRDAAEWASQATQQ 153

Query: 134 DLNKAKEDIAINVTSAYLQVLFNLELNKVAQNQVELSKDQLKRIKGLHDVGKASPAEVAE 193
           DL  A+  +  + +  Y ++ F  +  +V+Q  ++ S+  L  +K  +  G  S  +V +
Sbjct: 154 DLQSARLALLASASKNYWRIGFINQRIRVSQQSIDYSQQTLGLVKARYRAGSVSSLDVVD 213

Query: 194 AQARVAQDEMTAVQADNTYKLSLLSLSQLLELPTPEGFVLENPKEELKFEPLTAPD-DIY 252
           A+  +   + + +      + +L   + LL  P P   V+E   E L   PL   +  I 
Sbjct: 214 AEQNLLNQQSSHLALLRERQQALNEQTVLLGAP-PGNTVVE--PESLPTGPLPQINAGIP 270

Query: 253 IQAIAYKPGIKAAEYRLQGSLKNIRIAQSEFYPQLSFSAGLGSSYYTLNGEAESGFARQL 312
              + ++P I A E+RL+ +L N+ I ++++YP  S +  LG+S         +     L
Sbjct: 271 ASVLRHRPDISAKEWRLRETLANVDIKRTQYYPAFSLTGSLGAS--------STALLEFL 322

Query: 313 KNNLSKSISFNLSVPIFNRFSTRNRVRTARLQQSNLALQLDNAKKVLYK---EIQQAWYN 369
           +N L+ ++   LS+P          ++ AR   S+  LQL   K+ LYK   +I  A   
Sbjct: 323 RNPLA-TVGAGLSLPFLEWRQMDVDIKIAR---SDYELQLLEFKQALYKAMADIDDALSL 378

Query: 370 AVAAESKYTSSEVAVKANEESFRLMSEKFNNG 401
                ++    + A+    +S RL   ++  G
Sbjct: 379 RTQLMAQEKHLQAALALTRKSERLNESRYRQG 410