Pairwise Alignments

Query, 158 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas sp. S08-1

 Score = 58.2 bits (139), Expect = 8e-14
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 18/164 (10%)

Query: 8   FEQVVKQYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTWIWRVSLN 67
           F+ +V +Y++ I  +   F  DS E  D+ Q+  +  ++    F+G+S   TW++R+++N
Sbjct: 22  FDLLVLKYQHKILGLVVRFVHDSHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAIN 81

Query: 68  TC----ISSDRKKKIVSVPLIMGIDLFED----RDEDTTQIKMLYNRISRLKH------- 112
           T     +S  R+     V      + ++     +D ++ +  ML + I    H       
Sbjct: 82  TAKNYLVSRGRRPPDSDVS-SEDAEFYDGDHALKDIESPERAMLRDEIEATVHRTIQQLP 140

Query: 113 --FDRAIVLLWLENFSYEEIAAIVGISVKNVSVRLFRIKEELKK 154
                A+ L   +  SYE+IA+++   V  V  R+FR +E + K
Sbjct: 141 EDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDK 184