Pairwise Alignments

Query, 158 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 196 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 64.7 bits (156), Expect = 8e-16
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 14  QYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTWIWRVSLNTCISSD 73
           +Y N +Y  C  F K   E  DL  D+ + L+     FKG++   TW++  + N C++  
Sbjct: 41  RYSNIVYNKCLSFVKSKDEAQDLTHDIFIKLFFQLKKFKGDAKFSTWLYSFTYNFCVNYV 100

Query: 74  RKKKIVSVPLIMGIDLFE----DRDEDTTQIKMLYNRISR----LKHFDRAIVLL-WLEN 124
           ++K          +D  +    +  +D+   KM   R+ R    L   D+ ++L+ +++ 
Sbjct: 101 QRKYQKKKETFQRLDDLQHHPYEEIDDSEIYKMQAERLQRSLQSLDPNDKMVLLMKYMDG 160

Query: 125 FSYEEIAAIVGISVKNVSVRLFRIKEELKKMSNN 158
            S++EI   +G+    V +R+ R K+ L  +  N
Sbjct: 161 MSHKEIQQSIGVGESAVKMRINRAKQRLLDIYKN 194