Pairwise Alignments

Query, 158 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 188 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 6/157 (3%)

Query: 2   KKLEIEFEQVVKQYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTWI 61
           K  E EFE+ +K+Y+  I  V  ++S  +    DL Q++++ LW+ F  +  +  + TW 
Sbjct: 24  KTQEKEFERYLKKYEALIIKVARVYSHGAENQKDLIQEIVLQLWRAFPKYSADRGVSTWT 83

Query: 62  WRVSLNTCIS-----SDRKKKIVSVPLIMGIDLFEDRDEDTTQIKMLYNRISRLKHFDRA 116
           +R++LN  IS     S R+++             ++ D    ++K+LY  I  L   D+A
Sbjct: 84  YRIALNVSISYLRKESSRRRREEEYSQNQSRQT-DNCDPIDDRLKILYRFIHTLNATDKA 142

Query: 117 IVLLWLENFSYEEIAAIVGISVKNVSVRLFRIKEELK 153
           ++LL+LE    +EIA I+G++   VS +++RIK +LK
Sbjct: 143 LMLLFLEGCKNKEIAKIMGVTPGVVSTKIYRIKAQLK 179