Pairwise Alignments

Query, 311 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 335 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  138 bits (347), Expect = 2e-37
 Identities = 87/309 (28%), Positives = 153/309 (49%), Gaps = 23/309 (7%)

Query: 2   DELLQKYIAGNASEKESQRIMEWLREDEQHLREYKRQRKLYDI----------------- 44
           +E++ +Y+ G  SE+E   +  W++E E++ R+  R  ++Y +                 
Sbjct: 11  EEIINRYLTGQCSEEELIEVNAWMKESEENARQLFRMEEIYHLGKFDQYTDEQRILRAEK 70

Query: 45  TLWQTKSPVDIQQEKKDPLRRVLDVIVRIAAVIVFTVATTYFYTHHVLQDKEENMQTVVV 104
            L++       +Q K   + R +     IA ++V      Y++  +      + M   V 
Sbjct: 71  QLYKKLDEEKGKQSKILSMHRWMKYAAVIAVMLVMGGGVGYWFYQN---GNNQQMMVAVA 127

Query: 105 PAGQHAELYLADGTHVWLNSGSRLTFPGRFSKKVRHVELDGEGYFKVSSNIKQPFIVGTN 164
             G   E+ L DG+ VWLN+ + L +P  FS+K R+V L+GE YF+V+ N  +PF V ++
Sbjct: 128 SEGIVKEVVLPDGSKVWLNNAATLKYPREFSEKERNVYLEGEAYFEVTKNRHKPFTVQSD 187

Query: 165 RCNIRVLGTEFNVLAYEKDSIWETALLEGAVEILQKKSEVSLMKLKPGDMARLSKN--QL 222
              +RVLGT FN+ + ++  I E  L+EG +E+   K E  ++ L PG  A L+KN  +L
Sbjct: 188 AIRVRVLGTTFNLKSDKRCRIAEATLIEGEIEVKGNKEEGQII-LTPGQRAELNKNNGRL 246

Query: 223 TKEKIHTTDYFRWKEGLICFNDISLRDIMEKLKLYYDVNFVINNQQILDAHYTGKFRTHD 282
           T +++       W + LI F    +  I + L+ +YDV  +++        Y+G  +   
Sbjct: 247 TVKQVDAKLDAVWHDNLIPFQKADIFTITKALERFYDVKIILSPDIQTGKTYSGVLKRKS 306

Query: 283 GIEHVIRVL 291
            IE V++ L
Sbjct: 307 NIESVLKSL 315