Pairwise Alignments

Query, 311 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 330 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  133 bits (335), Expect = 5e-36
 Identities = 90/326 (27%), Positives = 159/326 (48%), Gaps = 29/326 (8%)

Query: 1   MDE-LLQKYIAGNASEKESQRIMEWLREDEQHLREYKRQ-------RKLYDITLWQTKSP 52
           MDE +L  Y+ G  +++E+ R+  W  E  ++ +  ++         ++  +    T++ 
Sbjct: 1   MDETILVNYLQGECNDEEAARVEAWCEEGPENRKALEQLYYTLFVGERIAVMNTVDTEAS 60

Query: 53  VD-----IQQEKKDPLRRVLDV----IVRIAAV----IVFTVATTYFYTHHVLQDKEENM 99
           +D     I++++K   R+ + +       +AA     +VF     +    + L D E   
Sbjct: 61  LDQFKSAIREKEKKAKRKSISIRWGRYATVAAAFLTGLVFAGGIAWGLLSNKLSDYE--- 117

Query: 100 QTVVVPAGQHAELYLADGTHVWLNSGSRLTFPGRFSKKVRHVELDGEGYFKVSSNIKQPF 159
             V+  AGQ A+  L DG+ VWLN+ S++ +   F    R ++L GE YF+VS +   PF
Sbjct: 118 --VITAAGQRAQTVLPDGSKVWLNASSKIVYHNSFWSSDRQIDLSGEAYFEVSHDKHAPF 175

Query: 160 IVGTNRCNIRVLGTEFNVLAYEKDSIWETALLEGAVEILQKKSEVSLMKLKPGDMARLSK 219
           IV + +    VLGT+FNV A + ++   T LL+G V +   ++E +   LKPG    ++ 
Sbjct: 176 IVNSKQIKTCVLGTKFNVRARQDENRVVTTLLQGLVRVDSPRTEENGYLLKPGQTLNVNT 235

Query: 220 NQLTKEKI---HTTDYFRWKEGLICFNDISLRDIMEKLKLYYDVNFVINNQQILDAHYTG 276
           +    E I     TD   W  G + F   SL +I   ++  YD+ F+  ++ +    +TG
Sbjct: 236 DTYQAELIEYNQPTDVLLWINGKLEFKQQSLLEITNIMEKLYDIKFIYKDETLKSERFTG 295

Query: 277 KFRTHDGIEHVIRVLALNNKFTYIKD 302
           +F T    + ++ VL   N F+Y KD
Sbjct: 296 EFSTDSTADEILNVLMHTNHFSYKKD 321