Pairwise Alignments

Query, 311 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 327 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  134 bits (338), Expect = 2e-36
 Identities = 95/304 (31%), Positives = 149/304 (49%), Gaps = 18/304 (5%)

Query: 3   ELLQKYIAGNASEKESQRIMEWLREDE-------QHLREYKRQRKLYDIT--LWQTKSPV 53
           EL  +Y  G  S  + + + E++ + E       Q  RE+   R     T   W+     
Sbjct: 9   ELAIQYFEGRISRADEKNLFEYIEQVEGGYGRFRQWEREWMNHRNTDSETDAEWEALKHK 68

Query: 54  DIQQEKKDPLRRV----LDVIVRIAAVIVFTVATTYFYTHHVLQDKEENMQTVVVPAGQH 109
              QE   PL +     +  I RIAAVI   V TT      +     +       P G  
Sbjct: 69  MYTQEAIVPLLKKSKPGIWKIARIAAVIALIVGTTLGIQQAIYLFTPKTFFVCEAPLGDK 128

Query: 110 AELYLADGTHVWLNSGSRLTFPGRFSKKVRHVELDGEGYFKVSSNIKQPFIVGTNRCNIR 169
           +++ L+DGT VWLN+GS L +   F+   R VEL+GEGYF+V+    + F V T+  ++ 
Sbjct: 129 SKIQLSDGTVVWLNAGSVLRYSNHFNTADRVVELEGEGYFEVTKQNGKQFTVKTHEYDVV 188

Query: 170 VLGTEFNVLAYEKDSIWETALLEGAVEILQKKSEVSLMKLKPGDMARLS--KNQLTKEKI 227
           V GT+FNV AY  DS   T LLEGAVE+  K+ ++   ++ PG+   L     QL  +K+
Sbjct: 189 VKGTKFNVSAYSDDSYITTTLLEGAVELNYKEDQI---RMSPGESISLDLVTRQLKGKKV 245

Query: 228 HTTDYFRWKEGLICFNDISLRDIMEKLKLYYDVNFVINNQQILDAHYTGKFRTHDGIEHV 287
           +      W E  I ++DI+L ++++KL   YDV+  + ++++ D  +    R  + I  V
Sbjct: 246 NARQAMAWAEDRIEYDDITLGEMVKKLSRQYDVHIQLESEKLGDMKFRVSLRNKETIVDV 305

Query: 288 IRVL 291
           +  L
Sbjct: 306 MDAL 309