Pairwise Alignments

Query, 311 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 360 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  128 bits (322), Expect = 2e-34
 Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 4/208 (1%)

Query: 93  QDKEENMQTVVVPAGQHAELYLADGTHVWLNSGSRLTFPGRFSKKVRHVELDGEGYFKVS 152
           Q K+     ++ P G+  +L L DGTH+W+NSG+R+ +P  F +  R + ++GE +  V 
Sbjct: 144 QKKKPEFNQLITPKGKRTQLTLPDGTHLWVNSGTRVIYPTHFERDQREIYVEGEVFLDVR 203

Query: 153 SNIKQPFIVGTNRCNIRVLGTEFNVLAYEKDSIWETALLEGAVEILQKKSEVSLMKLKPG 212
            N K PFIV T    ++VLGT FN+ AY  +      L+EG+V I  K      +KL PG
Sbjct: 204 RNEKAPFIVRTKDFQVQVLGTSFNISAYSSEKTSSVVLVEGSVNI--KSHNQQQVKLAPG 261

Query: 213 DMARLSKNQL-TKEKIHTTDYFRWKEGLICFNDISLRDIMEKLKLYYDVNFVINNQQILD 271
            +  +  +QL T + +    Y  W + ++ + D SL  +  KL LYY   FV++  ++  
Sbjct: 262 QLVNIHSDQLDTPQNVDVEPYICWIKNILMYTDDSLDKVFRKLNLYYGKEFVLDT-EVER 320

Query: 272 AHYTGKFRTHDGIEHVIRVLALNNKFTY 299
              +GK    D +E V+  ++ +    Y
Sbjct: 321 MQVSGKLDLKDKLEDVLHTISYSAPIEY 348