Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 543 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  184 bits (467), Expect = 8e-51
 Identities = 176/597 (29%), Positives = 272/597 (45%), Gaps = 80/597 (13%)

Query: 1   MKKLLLYI----GAGILLLSACHDLNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWPE 56
           MKKL  Y         LL + C DL+L P ++ +   ++++  + +  ++  Y   F   
Sbjct: 1   MKKLTNYTIMISACCTLLWTGCKDLDLAPENTFTDLTYWTSAAKAESMLNTAYSQMFSSN 60

Query: 57  DGQQQTDWSDD-YTSRDL---LTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKSHR 112
                   SD+ Y  R       S   GT +     + S W N Y AI   N ++E   R
Sbjct: 61  RFFYNEGASDNAYNGRGDNAGAASLAAGTYDPSLGRLQSQWDNNYSAIKTCNILLENIDR 120

Query: 113 A--IENGASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEEGLTMGRTDKSI 170
              I+ G       R+ AEA+F RA  + +L+  FGD+PL+  D+S E+  T+ RT KS 
Sbjct: 121 VEDIDEGER----ERMKAEARFIRAYQHFQLMTWFGDVPLLDQDISIEDAQTISRTPKSQ 176

Query: 171 VLAQIYKDFDDAISVLPTSY----TDQQRATQGAALALKARVALIMEDW-ETAADAAKAV 225
           VL  I  + + A  VLPT       ++ R T GAA+ALKARV L    W E  A     +
Sbjct: 177 VLEFILSELEAASEVLPTQQELPEAERGRITSGAAMALKARVHLYEGQWQEVVATTEPLI 236

Query: 226 M--DLNIYELHPDFGNLFLSTTKNSNEFIFK---IPRDATYDIYLGTGNGGVNQVYNDLP 280
           M  +   Y L P +  LF+   + S E I     +P+  T+            + ++  P
Sbjct: 237 MGNEYGNYGLFPAYEGLFMPENQYSQEDILSLQYVPQLRTW-----------GEFFDMAP 285

Query: 281 RNVGG-WTQTCPSWELLAAFTCTDGLLINESPL-FDPHEPFANRDPRLAETIVPFGSNHL 338
            + G       P+ EL+ ++   +GL I +S   +D ++P+ +RDPRL  TIV     HL
Sbjct: 286 LSAGARLNALAPTQELVDSYLMENGLPITDSNAGYDENDPYDHRDPRLTATIV----YHL 341

Query: 339 GYEYNPHPEALTC-MNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFKVDQD 397
            YE+  + +  T  +   T    +  D       ++  G   +K  D +     F    +
Sbjct: 342 -YEWEDNGDTHTIYIKPGTDPDESAADEYVPGSSSTTTGYYTRKYFDPS-RNTDFASGLN 399

Query: 398 IIYCRYAEILLTYAEAKIELNEIDNSVLD-ALNEVRARAYGVDKSDKASYPAFTSNDQST 456
           ++  RYA++LL YAEAK ELN++D +  D  +  +R RA G +      + A    D   
Sbjct: 400 LMLLRYADVLLMYAEAKNELNQMDQATWDQTIRALRERA-GFEAPAALDFDADLGQD--G 456

Query: 457 LRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFWA 516
           LR  +R ERR+E+A E +R  DI RW++AE V+N   +G                     
Sbjct: 457 LREVIRNERRVELAMEGLRVFDIRRWRIAEDVLNGWAHGA-------------------Q 497

Query: 517 FTPEMDEDGCADFSKLEEAGKCQALAVRSWND-RQYLWPIPTTELQINENLKQNPGY 572
           F P  +++G               + +RS++  + YLWPIP  E  +N NL QNPG+
Sbjct: 498 FGPPSEDNGYL------------RVNLRSFDPAKHYLWPIPRDERNLNPNLTQNPGW 542