Pairwise Alignments

Query, 446 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 463 a.a., sigma-54 dependent transcriptional regulator from Paraburkholderia sabiae LMG 24235

 Score =  312 bits (800), Expect = 1e-89
 Identities = 176/448 (39%), Positives = 259/448 (57%), Gaps = 6/448 (1%)

Query: 1   MSKILIIDDEVQIRSLLARMLGLEGYEVCQAGDCKAAIRQLEIQQPDVALCDVFLPDGNG 60
           M   LI+DD+   R  LA ++  +G     AGD + A  QL  Q PDV   D+ LPDG G
Sbjct: 1   MPHALIVDDDRDTREALAAIIAEDGLTTATAGDLRDARIQLVRQMPDVVFTDLKLPDGTG 60

Query: 61  VDLVLNIKKTAPNVEVILLTAHGNIPDGVQAIKNGAFDYITKGDDNNKIIPLISRAVEKA 120
           VDL  ++   +  VE +++T H  +   V A+K GA DY+ K  +  ++  +++R     
Sbjct: 61  VDLFEDLDPRS-GVEFVVITGHATVESAVSALKMGAADYLVKPINMQRVKSILARLPRAG 119

Query: 121 KMNVRLEKLEKKVSQLYSFDSILGESKVLKEAVMLAQKVSVTDVPVLLTGETGTGKEVFA 180
            +   +  L  ++ ++  F  +LG S V+++      +V+ T   V+L GE+GTGKEV A
Sbjct: 120 DLKAEIGTLRGELRRMGRFGLMLGNSGVMQQVYDQISRVAPTAASVMLVGESGTGKEVAA 179

Query: 181 QAIHYNSKRSKQSFVAVNCSSFSKELLESEMFGHKAGSFTGALKDKKGLFEEANNGTIFL 240
           Q +H  S R K +F+AVNC + S  L+ESEMFGH+ G+FTGA +  KG FE AN GT+FL
Sbjct: 180 QTLHQLSLRRKHAFLAVNCGAISPNLIESEMFGHERGAFTGADRQHKGYFERANGGTLFL 239

Query: 241 DEIGEMAFELQAKLLRILETGEYIKIGDTKPTHVNVRIIAATNRNLTEEIKAGRFREDLF 300
           DEI EM  ELQ KLLR+LETG ++++G TK    +VR+IAATNR+  + +  G+ R DL+
Sbjct: 240 DEITEMPIELQVKLLRVLETGMFMRVGTTKEIETDVRLIAATNRDPEQAVLEGKLRLDLY 299

Query: 301 YRLSVFQVHLPALRERTGDIRILATAFAKSFSEKLSYTVNEMTPAFLHALEQQPWKGNIR 360
           +RL+VF + LP LRER  D+ +LA +F    +E+   T     PA L  +    W GN+R
Sbjct: 300 HRLNVFPIGLPPLRERGKDVELLAQSFLNELNEQHG-TTKRFPPAVLEMMLSNAWPGNVR 358

Query: 361 ELRNVIERSLIVCEGGHLDVCDLPLEIQNTHYECS---DDNIGSFELAAMERRHIARVLE 417
           EL+N ++R+ I+          +PL+I  T  +     D   G+  L   +RR I   LE
Sbjct: 359 ELKNYVQRAYIMSGPDSDSTATVPLQISLTSGKLRARIDIPFGT-SLDEADRRLILATLE 417

Query: 418 YTKGNKTETARLLKIGLTTLYRKIEEYK 445
           +  G KT  A +L I L TLY ++ +Y+
Sbjct: 418 HCGGVKTRAAEVLGISLKTLYNRLVDYR 445