Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 455 a.a., DNA repair protein RadA from Pseudomonas simiae WCS417

 Score =  387 bits (994), Expect = e-112
 Identities = 202/459 (44%), Positives = 299/459 (65%), Gaps = 10/459 (2%)

Query: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRK----ETTNRRPVSGIETQKA 56
           MAK K +Y C+ CG   PKW G+C  CG WNT  E ++        T R   +G   Q+A
Sbjct: 1   MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTG---QQA 57

Query: 57  KPVILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPD 116
           +   L+E+  ++ PR +    EL+RVLGGGLV GS+VLIGG+PGIGKST+++QT+  +  
Sbjct: 58  QIKTLAEVSVEEIPRFSTASGELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIAS 117

Query: 117 KK-ILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQT 175
           +   LYV+GEES +Q+ +RA RL        ++ ET +E I    +   P +++IDSIQT
Sbjct: 118 RMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIATARIEKPKVMVIDSIQT 177

Query: 176 ISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVL 235
           I TE ++S+PG ++QVRE +A ++R+AK++ T + L+GH+ KEG++AGP+VLEH+VDTVL
Sbjct: 178 IFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVL 237

Query: 236 QFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIA 295
            FEG+     R+LR++KNRFG+  ELG++ M   GL++VSNPS + L++  E + G  + 
Sbjct: 238 YFEGESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVM 297

Query: 296 SAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLN 355
           +  EG RP L+E QALV  +   NP+R   G D  R+ MLLAVL +  G     +DVFLN
Sbjct: 298 ATWEGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLN 357

Query: 356 IAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEK 415
           + GG+KV + A DLA+++A++SS  +  +  ++ + GE+GLSGE+RPV   ++R+ EA K
Sbjct: 358 VVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAAK 417

Query: 416 LGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALF 454
            GFKR ++PK N          I ++ V ++E+A  ALF
Sbjct: 418 HGFKRAIVPKGNAP--KESPPGITIIGVTRLEQALDALF 454