Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 456 a.a., DNA repair enzyme from Pseudomonas putida KT2440

 Score =  387 bits (993), Expect = e-112
 Identities = 202/457 (44%), Positives = 296/457 (64%), Gaps = 5/457 (1%)

Query: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRK--ETTNRRPVSGIETQKAKP 58
           MAK K +Y C+ CG   PKW G+C  CG WNT VE ++            +G   Q+A+ 
Sbjct: 1   MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQI 60

Query: 59  VILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMP-DK 117
             L+E+  ++ PR      EL+RVLGGGLV GS+VLIGG+PGIGKST+++QT+  +    
Sbjct: 61  KTLAEVSVEEIPRFTTSSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGM 120

Query: 118 KILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQTIS 177
             LYV+GEES +Q+ +R+ RL        ++ ET +E I    +   P +++IDSIQTI 
Sbjct: 121 PALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIATARVEKPRVMVIDSIQTIF 180

Query: 178 TENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQF 237
           TE ++S+PG +AQVRE +A ++R+AK++ T + L+GH+ KEGS+AGP+VLEH+VDTVL F
Sbjct: 181 TEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF 240

Query: 238 EGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASA 297
           EG+     R+LR++KNRFG+  ELG++ M   GL++VSNPS + L++  E + G  + + 
Sbjct: 241 EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMAT 300

Query: 298 IEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIA 357
            EG RP L+E QALV  +   NP+R   G D  R+ MLLAVL +  G     +DVFLN+ 
Sbjct: 301 WEGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVV 360

Query: 358 GGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEKLG 417
           GG+KV + A DLA+++A++SS  +  +   + + GEIGLSGE+RPV   ++R+ EA K G
Sbjct: 361 GGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSGEVRPVPSGQERLKEAAKHG 420

Query: 418 FKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALF 454
           FKR ++PK N          ++++ V ++E+A  ALF
Sbjct: 421 FKRAIVPKGNAP--KEAPAGLQVIAVTRLEQALDALF 455