Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 461 a.a., DNA repair protein RadA from Serratia liquefaciens MT49

 Score =  362 bits (930), Expect = e-104
 Identities = 195/460 (42%), Positives = 298/460 (64%), Gaps = 10/460 (2%)

Query: 1   MAKE-KTVYVCSNCGQESPKWVGKCPSCGEWNTYVE---EIVRKETTNRRPVSGI--ETQ 54
           MAK  K  +VC+ CG + P+W G+C +C  WN+  E     V   + N R +SG   +  
Sbjct: 1   MAKAAKRAFVCNECGADYPRWQGQCSACHAWNSITEVRLAAVSSSSRNER-LSGYAGDAG 59

Query: 55  KAKPVILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRM 114
            +K   LS+I  ++ PR +    E +RVLGGG+VPGS +LIGG PG GKSTL++Q + ++
Sbjct: 60  ISKVQKLSDISLEELPRFSTGFLEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVLCKL 119

Query: 115 PDK-KILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSI 173
            ++ K LYV+GEES +Q+ +RA RL   +    ++ ETS+EQI +  +   P L++IDSI
Sbjct: 120 SEQMKTLYVTGEESLQQVAMRAHRLGLPTGGLNMLSETSIEQICLIAEQEQPKLMVIDSI 179

Query: 174 QTISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDT 233
           Q +   +I+SSPGS+AQVRE +A + RFAK     ++++GH+ K+GS+AGPKVLEH +D 
Sbjct: 180 QVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239

Query: 234 VLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVA 293
            +  +GD    +R LRS KNRFG+  ELG++ M + GLR+VSNPS + LS+  E  SG +
Sbjct: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299

Query: 294 IASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVF 353
           +    EG RP L+E QALV  ++  NP+R A G +  R+ +LLAVL +  G +++ +DVF
Sbjct: 300 VMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVF 359

Query: 354 LNIAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEA 413
           +N+ GG+KV++ + DLA++ +++SS  D  +  ++ + GE+GL+GEIRPV   ++RI EA
Sbjct: 360 VNVVGGVKVSETSADLALLMSLVSSLRDRPLPNDLVVFGEVGLAGEIRPVPSGQERISEA 419

Query: 414 EKLGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRAL 453
            K GFKR ++P  N+         +++  V+K+ +A   L
Sbjct: 420 AKHGFKRAIVPHANVP--KKPPANMQVFGVKKLADALDVL 457