Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 460 a.a., DNA repair protein RadA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  365 bits (938), Expect = e-105
 Identities = 189/429 (44%), Positives = 285/429 (66%), Gaps = 5/429 (1%)

Query: 5   KTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETTNRRP--VSGIETQK--AKPVI 60
           K  +VC+ CG + P+W G+C +C  WNT  E  +    T  R   +SG       +K   
Sbjct: 6   KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGVSKVQK 65

Query: 61  LSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPDK-KI 119
           LS+I  ++ PR +    E +RVLGGG+VPGS +LIGG PG GKSTL++QT+ ++ ++ K 
Sbjct: 66  LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEQMKT 125

Query: 120 LYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQTISTE 179
           LYV+GEES +Q+ +RA RL   +++  ++ ETS+EQI +  +   P L++IDSIQ +   
Sbjct: 126 LYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMA 185

Query: 180 NIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEG 239
           +I+SSPGS+AQVRE +A + RFAK     ++++GH+ K+GS+AGPKVLEH +D  +  +G
Sbjct: 186 DIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDG 245

Query: 240 DQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIE 299
           D    +R LRS KNRFG+  ELG++ M + GLR+VSNPS + LS+  E  SG ++    E
Sbjct: 246 DADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWE 305

Query: 300 GVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGG 359
           G RP L+E QALV  ++  NP+R A G +  R+ +LLAVL +  G +++ +DVF+N+ GG
Sbjct: 306 GTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGG 365

Query: 360 LKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEKLGFK 419
           +KV + + DLA++ A++SS  D  +  ++ + GE+GL+GEIRPV   ++RI EA K GF+
Sbjct: 366 VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFR 425

Query: 420 RFLLPKYNL 428
           R ++P  N+
Sbjct: 426 RAIVPAANV 434