Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 460 a.a., DNA repair protein from Escherichia coli BL21

 Score =  367 bits (941), Expect = e-106
 Identities = 193/434 (44%), Positives = 286/434 (65%), Gaps = 6/434 (1%)

Query: 1   MAKE-KTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETTNRRP--VSGIETQK-- 55
           MAK  K  +VC+ CG + P+W G+C +C  WNT  E  +    T  R   +SG       
Sbjct: 1   MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGV 60

Query: 56  AKPVILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMP 115
           AK   LS+I  ++ PR +    E +RVLGGG+VPGS +LIGG PG GKSTL++QT+ ++ 
Sbjct: 61  AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120

Query: 116 DK-KILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQ 174
            + K LYV+GEES +Q+ +RA RL   + +  ++ ETS+EQI +  +   P L++IDSIQ
Sbjct: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180

Query: 175 TISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTV 234
            +   +++SSPGS+AQVRE +A + RFAK     ++++GH+ K+GS+AGPKVLEH +D  
Sbjct: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240

Query: 235 LQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAI 294
           +  +GD    +R LRS KNRFG+  ELG++ M + GLR+VSNPS + LS+  E  SG ++
Sbjct: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300

Query: 295 ASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFL 354
               EG RP L+E QALV  ++  NP+R A G +  R+ +LLAVL +  G ++A +DVF+
Sbjct: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360

Query: 355 NIAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAE 414
           N+ GG+KV + + DLA++ A++SS  D  +  ++ + GE+GL+GEIRPV   ++RI EA 
Sbjct: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420

Query: 415 KLGFKRFLLPKYNL 428
           K GF+R ++P  N+
Sbjct: 421 KHGFRRAIVPAANV 434