Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 468 a.a., DNA repair protein from Agrobacterium fabrum C58

 Score =  407 bits (1047), Expect = e-118
 Identities = 211/435 (48%), Positives = 291/435 (66%), Gaps = 20/435 (4%)

Query: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETTNRRPVSGIET------Q 54
           MAK KT +VC NCG    +W GKC  CGEWNT VEE          P+ GI +      +
Sbjct: 1   MAKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEE---------DPMGGIGSGPGKVPK 51

Query: 55  KAKPVILSEI--EADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVL 112
           K +PV L+ +  E ++ PRI     EL+R  GGG V GS VLIGG+PGIGKSTL+MQ   
Sbjct: 52  KGRPVTLTSLSGEIEEAPRIPTGISELDRATGGGFVRGSAVLIGGDPGIGKSTLLMQAAA 111

Query: 113 RMPDK--KILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHI-KNTSPDLVI 169
            +  +  +++YVSGEE+  Q++LRA RL    +D L+  ET++E I   + +   PDL+I
Sbjct: 112 ALSRRGHRVIYVSGEEAVAQVRLRAQRLGSADTDVLLAAETNVEDILATVSEGKRPDLII 171

Query: 170 IDSIQTISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEH 229
           IDSIQT+ ++  +S+PG++ QVR    +++RFAK+T   ++L+GH+ KEG IAGP+V+EH
Sbjct: 172 IDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEH 231

Query: 230 IVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGM 289
           +VD VL FEGD+ + YRILR++KNRFG T E+G++EM   GLR+VSNPSEL L + +E  
Sbjct: 232 MVDAVLYFEGDRGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSELFLGERNEKS 291

Query: 290 SGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQ 349
            G A+ + IEG RP L+E QALV++   G P+R+  G+D  R+ M+LAVLE   G KL Q
Sbjct: 292 PGAAVFAGIEGTRPVLVEVQALVAATSLGTPRRAVVGWDSSRLAMILAVLEAHCGVKLGQ 351

Query: 350 KDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQR 409
            DV+LN+AGG ++++PA D+A+ SA++SS    A+  +    GEI LSG +RPV    QR
Sbjct: 352 HDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSGAVRPVAHTVQR 411

Query: 410 IGEAEKLGFKRFLLP 424
           + EAEKLGF   LLP
Sbjct: 412 LKEAEKLGFSAALLP 426