Pairwise Alignments

Query, 303 a.a., putative transport protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 278 a.a., Small-conductance mechanosensitive channel from Pseudomonas sp. S08-1

 Score =  227 bits (578), Expect = 3e-64
 Identities = 107/263 (40%), Positives = 174/263 (66%), Gaps = 1/263 (0%)

Query: 35  DKLSLITQQLVDFGIRAGERILIATLVFIVGRFLISMLNRFVGRLMDRRKVDISIKTFVK 94
           D+L  ++Q  +   +    ++ +A +  ++G +LI+ +   +  LM+ RKVD ++  F+ 
Sbjct: 6   DELVRLSQAWLPVVLEYSGKLTLALVTLVLGWWLINRVTGRLQLLMEGRKVDRALTGFIG 65

Query: 95  SLVNILLTILLIISVVGALGVETTSFAALLASAGVAVGMALSGNLQNFAGGLIVLLFKPY 154
           SL NILL +LL++SV   +G+ T SF A + +AG+A+G+AL G+L NFAGG+++LLF+P+
Sbjct: 66  SLANILLKVLLMVSVATMIGISTASFIAAIGAAGLAIGLALQGSLANFAGGVLILLFRPF 125

Query: 155 KVGDWIESQGVSGTVKEIQIFHTILTTGDNKVIYIPNGAMSSGVVTNYNTQTTRRVEWIV 214
           ++GDWIE+QG SGTV  IQIFHT+L TGDN+ + +PNGA+S+G + N + Q TR++ + V
Sbjct: 126 RIGDWIEAQGQSGTVDSIQIFHTVLRTGDNRTVILPNGALSNGAIVNTSRQATRQIVFDV 185

Query: 215 GVDYGEDYNKVQQIVRDILTADNRILTDPAPFIALHALDASSVNVVARVWVNTADYWGVY 274
            VDY  D  + QQ++R+ +  D R+L DPAP + +  L  +++ +  RVW   +DYW V 
Sbjct: 186 KVDYDSDLQQAQQVLRE-MAQDPRVLKDPAPAVVVAGLGETAITLSLRVWTANSDYWPVT 244

Query: 275 FDINKTIYETFNEKGINFPFPQL 297
           F  N+ I +   + G++   P L
Sbjct: 245 FRFNEEIRDRLRQVGVDIAVPGL 267