Pairwise Alignments

Query, 1010 a.a., multidrug efflux membrane fusion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1017 a.a., Multidrug efflux system, inner membrane proton/drug antiporter (RND type) from Pseudomonas sp. S08-1

 Score =  659 bits (1701), Expect = 0.0
 Identities = 363/1008 (36%), Positives = 600/1008 (59%), Gaps = 10/1008 (0%)

Query: 1    MNISELSIRRPVLATVLTIIILLFGFIGYSYLGVREYPSVDNPIISVSCSYPGANADVIE 60
            M  ++  IRRPVLATV++++I+L GF  +S L +R+YP ++N +I+V+ +YPGANA+ I+
Sbjct: 1    MAFTDPFIRRPVLATVVSLLIILLGFQAFSKLVIRQYPQMENALITVATAYPGANAETIQ 60

Query: 61   NQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSRAQRYLP 120
              IT+PL+Q++    GI  ++S SQQ  S I++   +  D +    ++  K +  +  LP
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSSSQQNLSTISIYARIGADTDRLFTELLAKANEVKNQLP 120

Query: 121  RDCDPPTVSKADADAMPILMVALQSDKRSLLELSEIADLTVKEQLQTISDVSSVSIWGEK 180
            +D + P +SK  ADA  ++ V+  SD+ S  ++++     ++ +L T+  ++   I G +
Sbjct: 121  QDAEDPVLSKEAADASALMYVSFYSDELSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  RYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLGLMHTADEF 240
             ++MRLWLDPVKMA YGIT  DV +AV   N    +G ++G     +I     + +A+ F
Sbjct: 181  VFAMRLWLDPVKMAAYGITATDVTDAVQRYNFLAAAGEVKGQYVVTSINATTDLKSAEAF 240

Query: 241  NNLIVKEDNNRIVRFSDIGRAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVY 300
              + VK   +  V   DI R E+G  +  S    +G+P V + +   P AN +++   V 
Sbjct: 241  AAIPVKTSGDSRVLVRDIARVEMGAENYDSISSFDGIPSVYIAIKGTPSANPLDVIKHVR 300

Query: 301  KRMEQMKKDLPEDVTYSYGFDNTKFIRASINEVKETVYVAFILVIIIIFLFLRDWRVTLV 360
              + +++  LP ++  S  +D T+FIRASI EV +T+  A ++VI+++FLFL  +R  L+
Sbjct: 301  GILPELESQLPPNLKVSIAYDATEFIRASIEEVVKTLGEAVLIVIVVVFLFLGAFRSVLI 360

Query: 361  PCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENIYIRIEKGMSPK 420
            P I IP+S+IG  F M L G+SIN+L++LA+VLA+GLVVDDAIV+ ENI+  IE+G +P 
Sbjct: 361  PVITIPLSMIGVLFFMQLMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKTPF 420

Query: 421  EAGIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGSVIISSFAALTF 480
            +A IEGA+EI   VIS TITL AV+ PI F++G+TG LF+EF++ ++G+VIIS   ALT 
Sbjct: 421  DAAIEGAREIAVPVISMTITLAAVYAPIGFLEGLTGALFKEFALTLAGAVIISGVVALTL 480

Query: 481  TPMLATKLLIKREKQNWFYTKTEPFFEGMNRWYSRSLAAFLRKRWLALPFTFITICLIGF 540
            +PM+ ++LL   E       K +  F+ + R Y ++L   L  R + + F  I +CLI  
Sbjct: 481  SPMMCSRLLRHEENPTGLAHKLDMAFDKLKRRYQKALHGTLNTRPVVVVFGIIVMCLIPV 540

Query: 541  LWNAIPAEMAPLEDRSQISINTRGAEGVTYEYIRDYTEDINQLVDSILPDAEAVTAR--- 597
            L +   +E+AP ED+  + +     +     Y+  YT+   ++         +       
Sbjct: 541  LLSFTKSELAPEEDQGIVFLFANAPQPTNLNYMNAYTDQFVKIFKEFPEYYSSFQINGFD 600

Query: 598  -VSSGSGNVRITLKDMKDRDYTQMEVAEKISKAVQKKTMARSFVQQQSSFGGRRGSMPVQ 656
             V SG G   +T     +R+ TQME+   +   +      + F     S  G    +P Q
Sbjct: 601  GVQSGIGGFLLT--PWSERERTQMELLPIVQHRLNDIPGLQIFGFNLPSLPGTGEGLPFQ 658

Query: 657  YVLQATN-LEKLQEVLPQFMAKVYENPVFQMADVDLKFSKPEARIRINRDKASVMGVSTK 715
            +V+   N  E L +V  +   +   +  F   +VDL F KPE  + I+R KA+ MGVS +
Sbjct: 659  FVINTPNDYESLLQVTEKIKQEALASGKFAFLNVDLAFDKPEVVVDIDRAKAAQMGVSMQ 718

Query: 716  NIAQTLQYGLSGQRMGYFYMNGKQYEILGEINRQQRNKPADLKAIYIRSSNGDMIQLDNL 775
            ++  TL   L    +  F ++G+ Y+++ ++ R  R+ P+ L   +++S +G M+ L  L
Sbjct: 719  DLGATLAILLGEGEVNRFTIDGRSYKVIAQVERAYRDNPSWLSNYHVKSESGQMVPLATL 778

Query: 776  IELENGIAPPKLYRYNRFVSATISAGLADGKTIGQGLDEMDKIAKETLDDTFRTALSGDS 835
            I++ +   P KL ++ +  +A I        ++G+ +D + +IA++     +    +G S
Sbjct: 779  IKVSDRARPTKLKQFQQLNAAIIEG--VPIVSMGEAVDTVAQIAQKEAPRGYTFDYAGAS 836

Query: 836  KEYRESSSSLMFAFILAILLIYLILAAQFESFKDPLIIMLTVPLAIAGALVFMYFGDITM 895
            ++Y +  S+L   F LA+ +I+L+LAAQFESF+DPL+I++TVPL+I GAL+ ++ G  +M
Sbjct: 837  RQYIQEGSALFVTFALALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPIFLGFSSM 896

Query: 896  NIFSQIGIIMLIGLVAKNGILIVEFANQ-KQEAGEDKMSAIKDAALQRLRPILMTSASTV 954
            NI++Q+G++ LIGL++K+GILIVEFANQ + + G     AI++AA  RLRP+LMT+A+ V
Sbjct: 897  NIYTQVGLVTLIGLISKHGILIVEFANQLRHDKGLSVREAIEEAASIRLRPVLMTTAAMV 956

Query: 955  LGLIPLAFASGEGANQRIAMGTAVVGGMVVSTLLTMYIVPAIYSYIST 1002
             G++PL  A+G GA  R  +G  +  GM + TL T++++P +Y+ +++
Sbjct: 957  FGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCVYTLLAS 1004