Pairwise Alignments

Query, 1010 a.a., multidrug efflux membrane fusion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1017 a.a., efflux RND transporter permease subunit from Paraburkholderia sabiae LMG 24235

 Score =  592 bits (1527), Expect = e-173
 Identities = 334/1010 (33%), Positives = 564/1010 (55%), Gaps = 11/1010 (1%)

Query: 1    MNISELSIRRPVLATVLTIIILLFGFIGYSYLGVREYPSVDNPIISVSCSYPGANADVIE 60
            M  +++ I RPVLA+V++++IL+ G    S L V EYP  +N ++++  SY GA+AD + 
Sbjct: 1    MKFTDIFIERPVLASVVSLLILVLGLRSLSALKVGEYPQTENGVVTIKTSYYGASADTMA 60

Query: 61   NQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSRAQRYLP 120
              IT+PLE  I    GI  +SS S  G S IT    L+ D   A  ++  +++  +  LP
Sbjct: 61   GFITQPLESAIAQAQGIDYMSSKSSAGVSTITATLRLNYDSNRALTEINTQIASVRNQLP 120

Query: 121  RDCDPPTVSKADADAMPILMVALQSDKRSLLELSEIADLTVKEQLQTISDVSSVSIWGEK 180
                 P ++         + V   SD      +++     VK +L +I  V +  I G +
Sbjct: 121  PQAQQPVLTMQVGQTTDAMYVGFHSDVLPSNNVTDYLLRVVKPKLDSIQGVQTAEILGGR 180

Query: 181  RYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLGLMHTADEF 240
            ++++R WLD  ++A + +T  DV  A+ N N     G+ +G    + +     +H+ D+F
Sbjct: 181  QFALRAWLDSNRLAAHKVTAADVSTALGNNNYLATLGTTKGQMISVDLNAGTDLHSVDDF 240

Query: 241  NNLIVKEDNNRIVRFSDIGRAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVY 300
              L+VK+ N  IVR  D+    LG  +    +  +G   V + +   P AN +++A  V 
Sbjct: 241  KKLVVKQKNGAIVRLEDVANVVLGADNYDFNVAFSGKRSVFIGIKVAPDANVLDVAKRVK 300

Query: 301  KRMEQMKKDLPEDVTYSYGFDNTKFIRASINEVKETVYVAFILVIIIIFLFLRDWRVTLV 360
                 ++K  P  +T    +D T FI  +I EV +T+  A ++V ++I LFL  +R  +V
Sbjct: 301  TIFPDLQKQFPTGMTGDIVYDATDFINTAIEEVVKTLVEALLIVTVVISLFLGSFRTVIV 360

Query: 361  PCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENIYIRI-EKGMSP 419
            P I +P+SLIG FFVM L G+SIN+L++LA+VLA+GLVVDDAI++ EN+   + E+G  P
Sbjct: 361  PVIAMPLSLIGTFFVMQLLGYSINLLTLLALVLAIGLVVDDAIIVVENVERHMKEEGKQP 420

Query: 420  KEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGSVIISSFAALT 479
             EA +  A+E+   +++ T+ LVAV+ PI F  G+TG LF EF+  ++G+V +S   AL+
Sbjct: 421  FEAALIAARELGGPILAMTVVLVAVYLPIGFQGGLTGALFTEFAFTLTGAVTVSGVIALS 480

Query: 480  FTPMLATKLLIKREKQNWFYTKTEPFFEGMNRWYSRSLAAFLRKRWLALPFTFITICLIG 539
             +PM+ ++     ++   F    +  FE ++R Y   L A L    + +    + +C   
Sbjct: 481  LSPMMCSRFFRTDQESGRFARFVDRQFERVHRGYGGLLHAMLDTWPVFIVMGALLLCGTV 540

Query: 540  FLWNAIPAEMAPLEDRSQISINTRGAEGVTYEYIRDYTEDINQLVDSILPDAEAV----- 594
            +L+    +E+AP ED+  +    +G    T + ++ Y + +   +   LP+   +     
Sbjct: 541  YLFTTSKSELAPQEDQGIVLSKIQGPPNATIQQMQTYADQVFD-ISKQLPEYSQMFQLTG 599

Query: 595  TARVSSGSGNVRITLKDMKDRDYTQMEVAEKISKAVQKKTMARSFVQQQSSFGGRRGSMP 654
               ++ G G V     D + +  TQ++   ++ +       AR    Q     G +G +P
Sbjct: 600  APTLNQGFGGVLFKTWDKRKKGATQLQ--NELQQKWDSIAGARVAAFQFPPLPGAQG-LP 656

Query: 655  VQYVLQATN-LEKLQEVLPQFMAKVYENPVFQMADVDLKFSKPEARIRINRDKASVMGVS 713
            VQ+V+  T   E L EV    + K  E+ +F   D DLK  KPE+ + ++RDK + +G+S
Sbjct: 657  VQFVISTTEPFENLNEVSQAVLQKARESGMFFFVDSDLKIDKPESVLLVDRDKVASLGLS 716

Query: 714  TKNIAQTLQYGLSGQRMGYFYMNGKQYEILGEINRQQRNKPADLKAIYIRSSNGDMIQLD 773
              ++ QTL   L G  + YF + G+ Y+++ ++ +  R  P+ +   Y+R+ +G +I   
Sbjct: 717  QSDVGQTLGAALGGNYVNYFSIAGRSYKVIPQVLQTDRLNPSQVLDYYLRTPDGSVISAS 776

Query: 774  NLIELENGIAPPKLYRYNRFVSATISAGLADGKTIGQGLDEMDKIAKETLDDTFRTALSG 833
             +  L+  I P  +  + +  SATIS  LA G + G+ LD + K + +     + T  SG
Sbjct: 777  TVTHLKQTIVPESINHFQQLNSATISGVLAPGISQGEVLDFLRKASTDVAPTGYTTDYSG 836

Query: 834  DSKEYRESSSSLMFAFILAILLIYLILAAQFESFKDPLIIMLTVPLAIAGALVFMYFGDI 893
             S+++ + S   +   + A ++++L LAAQFESF+DP++I+++VP+A+ GAL+F+  G  
Sbjct: 837  LSRQFVQESGGFVITLLFAAIIVFLALAAQFESFRDPVVILVSVPMALFGALIFINMGLS 896

Query: 894  TMNIFSQIGIIMLIGLVAKNGILIVEFANQKQEAGEDKMSAIKDAALQRLRPILMTSAST 953
            T+NI++Q+G++ L+GL++K+GILIV+FAN+ Q AG  K  A+++AA  RLRPILMT+A+ 
Sbjct: 897  TLNIYTQVGLVTLMGLISKHGILIVQFANELQRAGRGKREALEEAAGVRLRPILMTTAAM 956

Query: 954  VLGLIPLAFASGEGANQRIAMGTAVVGGMVVSTLLTMYIVPAIYSYISTN 1003
            VLG++PL  ASG GA  R AMG  +  G+ + TL T+++VPA+Y  +  +
Sbjct: 957  VLGVLPLVTASGAGAAGRNAMGLVIFTGLSIGTLFTLFVVPAMYMLLGAD 1006