Pairwise Alignments

Query, 1010 a.a., multidrug efflux membrane fusion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1040 a.a., MdtB/MuxB family multidrug efflux RND transporter permease subunit from Pectobacterium carotovorum WPP14

 Score =  541 bits (1394), Expect = e-158
 Identities = 330/1009 (32%), Positives = 543/1009 (53%), Gaps = 17/1009 (1%)

Query: 4    SELSIRRPVLATVLTIIILLFGFIGYSYLGVREYPSVDNPIISVSCSYPGANADVIENQI 63
            S L I RPV  T+L I ILL G IGY  L V   P VD P I V   YPGA+ DV+ + I
Sbjct: 13   SRLFILRPVATTLLMIAILLAGIIGYRALPVSALPEVDYPTIQVITLYPGASPDVVTSAI 72

Query: 64   TEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSRAQRYLPRDC 123
            T PLE+    + G++ +S+ S  G S IT++F+L + L+ A  DV+  ++ A   LP D 
Sbjct: 73   TAPLERQFGQMSGLKQMSTQSAGGASVITLQFQLELSLDVAEQDVQAAINAASNLLPNDL 132

Query: 124  D-PPTVSKADADAMPILMVALQSDKRSLLELSEIADLTVKEQLQTISDVSSVSIWGEKRY 182
              PPT SK +    PI+ +A+ S   S+ ++ ++ D  + +++  ++ V  VS+ G +R 
Sbjct: 133  PYPPTYSKVNPADPPIMTLAVTSSAMSMTQVQDMVDNRIAQKISQVAGVGLVSLAGGQRP 192

Query: 183  SMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLGLMHTADEFNN 242
            ++R+ L+   +A YG+T   ++ A+   NV    GS++G T  +T+     M + D++  
Sbjct: 193  AVRVRLNAPALAAYGLTSETIRTAITAANVNSAKGSLDGPTRSVTLSANDQMKSVDDYRK 252

Query: 243  LIVKEDNNRIVRFSDIGRAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYKR 302
            LIV   N   VR  D+   E    +I      N    + + V  QPGAN I   D++ K 
Sbjct: 253  LIVAWKNGAPVRLQDVATIEQAAENIHLGAWANRQQAIIINVQRQPGANVITTTDSISKM 312

Query: 303  MEQMKKDLPEDVTYSYGFDNTKFIRASINEVKETVYVAFILVIIIIFLFLRDWRVTLVPC 362
            +  +K  LP  V  +   D T  IRAS+ +V+  + +A  LV+++I+LFLR+   TL+P 
Sbjct: 313  LPALKASLPNSVEVTTLTDRTTSIRASVKDVQFELLLAIALVVMVIYLFLRNAVATLIPS 372

Query: 363  IVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENIYIRIEKGMSPKEA 422
            I +P+SLIG F  MY  GFSIN L+++A+ +A G VVDDAIV+ ENI   IEKG  P  A
Sbjct: 373  IAVPLSLIGTFAAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENIARYIEKGEKPLNA 432

Query: 423  GIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGSVIISSFAALTFTP 482
             ++GA EI F +IS T +L+AV  P++FM  + GRLFREF++ ++ S++IS+  +LT TP
Sbjct: 433  ALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVSILISAVVSLTLTP 492

Query: 483  MLATKLLIKR--EKQNWFYTKTEPFFEGMNRWYSRSLAAFLRKRWLALPFTFITICLIGF 540
            M+  ++L  +   KQN F   +E FF  +   Y   L   L   WL L     T+ L   
Sbjct: 493  MMCARMLSHQSLRKQNRFTRASERFFTRLIDAYGVWLRKVLNHPWLTLSVALGTLLLTVL 552

Query: 541  LWNAIPAEMAPLEDRSQISINTRGAEGVTYEYIRDYTEDINQLVDSILPDAEAVTA---- 596
            L+  IP    P++D   I    +  + V++  + D  + +  ++    P  E+V++    
Sbjct: 553  LYIWIPKGFFPIQDNGIIQGTVQAPQTVSFSNMADRQQRVASIIMKD-PTVESVSSFIGV 611

Query: 597  ---RVSSGSGNVRITLKDMKDRDYTQMEVAEKISKAVQKKTMARSFVQ--QQSSFGGRRG 651
                 +  SG ++I LK + +R     E+  ++ +   +    + ++Q  Q  +   +  
Sbjct: 612  DGTNAALNSGRLQINLKPLSERSERIPEIISRLQQQTAQIPGIQLYLQPVQDLTIDTQIS 671

Query: 652  SMPVQYVLQATNLEKLQEVLPQFMAKVYENPVFQMADVDLKFSKPEARIRINRDKASVMG 711
                Q+ LQA +L++L + +P  M ++ + P  +    D +     A + +NRD AS +G
Sbjct: 672  RTQYQFTLQAMSLDELSQWVPTLMTELKKLPQLEDVSSDWQDGAAVAYVNVNRDSASRLG 731

Query: 712  VSTKNIAQTLQYGLSGQRM-GYFYMNGKQYEILGEINRQQRNKPADLKAIYIRSSNGDMI 770
            ++   +   L Y   GQR+    Y    QY ++ E +         L  + + SS+G  I
Sbjct: 732  ITMSQVDSAL-YNAFGQRLVSTIYTQASQYRVVLEHDTTNNTGLDALNDVRLISSDGGTI 790

Query: 771  QLDNLIELENGIAPPKLYRYNRFVSATISAGLADGKTIGQGLDEMDKIAKE-TLDDTFRT 829
             L ++  +E    P  +   ++F S TIS  +A G  +G+ +D + +  ++  L     T
Sbjct: 791  PLSSIATIEERQGPLAINHIDQFPSTTISFNVAKGYALGEAVDAITQAEQQMNLPADITT 850

Query: 830  ALSGDSKEYRESSSSLMFAFILAILLIYLILAAQFESFKDPLIIMLTVPLAIAGALVFMY 889
               G +  ++ + SS ++  + AI+ +Y++L   +ESF  P+ I+ T+P A  GAL+ + 
Sbjct: 851  RFQGSTLAFQSALSSTVWLIVAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALM 910

Query: 890  FGDITMNIFSQIGIIMLIGLVAKNGILIVEFA-NQKQEAGEDKMSAIKDAALQRLRPILM 948
                 +++ + IGII+LIG+V KN I++++FA   ++E G     AI  A L R RPILM
Sbjct: 911  MAGNELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMKPYDAIYQACLLRFRPILM 970

Query: 949  TSASTVLGLIPLAFASGEGANQRIAMGTAVVGGMVVSTLLTMYIVPAIY 997
            T+ + +L  +PL  ++G GA  R  +G  +VGG+++S +LT++  P IY
Sbjct: 971  TTMAALLSALPLMLSTGVGAELRQPLGICMVGGLIMSQVLTLFTTPVIY 1019