Pairwise Alignments

Query, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 185 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 95.1 bits (235), Expect = 7e-25
 Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 9/165 (5%)

Query: 17  FSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLFSAVKH 76
           F  LY  YY  LV +A  ++    +AE++VQ+ F++ WE  E        D + +++VK+
Sbjct: 20  FDYLYHRYYKNLVNYAFTFLLDSSEAEDLVQNLFIHFWENLESFQLKGTLDGFFYTSVKN 79

Query: 77  RCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRAIDSLPE 136
           RCLN L+S + + D+ + L         ++   + L  + ++  + +E+++  AI +LP 
Sbjct: 80  RCLNKLKS-IDVYDKHKILY--------IEAMLVHLSREEEIDKNVLEEELLMAISNLPV 130

Query: 137 RCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREEL 181
           + REI V+   KG K  EIAE+L +S+NTV+ Q+     KLR E+
Sbjct: 131 QAREIIVLKYFKGQKIAEIAETLNLSENTVKTQLKRGKSKLRNEM 175