Pairwise Alignments

Query, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 180 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 92.4 bits (228), Expect = 4e-24
 Identities = 52/175 (29%), Positives = 99/175 (56%), Gaps = 5/175 (2%)

Query: 17  FSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWE--RKEILPELQQPDAYLFSAV 74
           F+ +Y +YY R   F   YV     AE+IV +  +YLWE  +K+ +P ++   A L + +
Sbjct: 6   FNSIYTTYYRRAFLFTLSYVHNDLVAEDIVSEAIIYLWELSKKQEIPSIE---AVLITYI 62

Query: 75  KHRCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRAIDSL 134
           + + LN+L+      +  Q L+D  ++E ++++ +L+  D  ++  +E+  ++   +  +
Sbjct: 63  RSKSLNYLKHLQVQENVYQNLTDKGQRELEIRISTLEACDPKEVMSEELRSKVKTLLAGM 122

Query: 135 PERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREELRHCMPLLL 189
           PE+ R  F+  +L G  ++EIAE LGIS   VE  ++ A++ LR+ L+   P L+
Sbjct: 123 PEKTRIAFISDRLDGKSHKEIAEELGISVKGVEYHISKAVKLLRDNLKEYAPFLI 177