Pairwise Alignments

Query, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 189 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 89.7 bits (221), Expect = 3e-23
 Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 9/177 (5%)

Query: 17  FSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLFSAVKH 76
           F  LY +YY  LV +A   VG    AE+IVQ+ F  +WE+K     L     YL+++V++
Sbjct: 19  FRLLYKNYYKALVCYAITIVGDSESAEDIVQELFSTIWEKKMFFRSLASFRVYLYNSVRN 78

Query: 77  RCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRAIDSLPE 136
             L++L+ +    +  Q + D     F+++       ++     +EV +Q+ + ID+LP+
Sbjct: 79  ASLDYLKHKDVEGNYLQKMLDSHSTTFRME------EEEEGFFSEEVYRQLLQTIDALPD 132

Query: 137 RCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREEL--RHCMPLLLLL 191
           RCRE+F+M  ++G K  EIA +L +S  TV+ Q   A+  LR++L   H + L +LL
Sbjct: 133 RCREVFLM-YMEGKKNEEIATALHVSLETVKTQKKRAMSFLRKKLGSYHFLLLQMLL 188