Pairwise Alignments

Query, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 196 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 7/180 (3%)

Query: 14  QKLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLFSA 73
           +  +  +Y  +YA L   A+ Y+     +E IV D   +LWE +E L       +YL  A
Sbjct: 17  ENAYRYIYDHHYALLCYVANGYLKDQFLSETIVGDTIFHLWEIRETLDISVSIRSYLLRA 76

Query: 74  VKHRCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSI---DEVEKQICRA 130
           V++RC+N+L S+     R    S +M  E       + L D   + I    E+E +I +A
Sbjct: 77  VRNRCINYLNSERE--KREIAFSALMPDEITDD--KIILSDSHPLGILLERELENEIYKA 132

Query: 131 IDSLPERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREELRHCMPLLLL 190
           ID LP+ CR +F  S+ +G  Y EI+  LGIS NTV+  +  AL  L   L   +  LLL
Sbjct: 133 IDKLPDECRRVFAKSRFEGKSYEEISGELGISINTVKYHIKNALASLHAHLSKYLISLLL 192