Pairwise Alignments

Query, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 195 a.a., putative RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 81.3 bits (199), Expect = 1e-20
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 15  KLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLFSAV 74
           K F K+Y +YY  L   A  YV     A  IV D F+  W+ +  +     P  YL  A+
Sbjct: 20  KAFDKIYHTYYLYLCAIAVYYVHDKRVAGEIVNDVFVSFWQNRHHITYPALP--YLRRAI 77

Query: 75  KHRCLNFLRS----QLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRA 130
           ++  +++LRS    +  + ++ + +   +E         LQ L+ S+M+     + I R 
Sbjct: 78  QNASISYLRSSAFNERIMTEQMEEIWAFLENHILSSDNPLQALESSEMN-----EIILRK 132

Query: 131 IDSLPERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREEL 181
           ++ LP +CR +F  S  +G  Y EIAE   I+  TV  QM IAL KLRE L
Sbjct: 133 VEELPAKCRAVFKASLYEGKSYSEIAEEQNINVATVRVQMKIALTKLRESL 183