Pairwise Alignments

Query, 164 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score = 52.8 bits (125), Expect = 3e-12
 Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 8   LINQYQGILQKICNIYFYQHPFREDYYQEILIRLWKAYPKFKQESTVSTWLYRVTLNTAI 67
           L+ +YQ  +  +   + +     +D  QE  I+ ++A   F+ +S   TWLYR+ +NTA 
Sbjct: 25  LVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAK 84

Query: 68  DLVRKESVQPVYKELSTQEYAIHD--------SHPEENTATDKKE-QLYQAINRLSE-IE 117
           + +     +P   ++S+++   +D          PE     D+ E  +++ I +L E + 
Sbjct: 85  NYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERALLRDEIEGTVHRTIQQLPEDLR 144

Query: 118 KAIIILYLESYEYKEIAAVIGISESNVGVKINRIKKQLIKQL 159
            A+ +   +   Y++IA+V+      V  +I R ++ + K L
Sbjct: 145 TALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186