Pairwise Alignments

Query, 164 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 196 a.a., RNA polymerase sigma factor SigX from Pseudomonas putida KT2440

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 8/153 (5%)

Query: 7   ELINQYQGILQKICNIYFYQHPFREDYYQEILIRLWKAYPKFKQESTVSTWLYRVTLNTA 66
           EL+ +YQ  L  +C  Y       +D  QE+++++      F+ +S   TWLY +T N  
Sbjct: 38  ELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNEC 97

Query: 67  IDLVRKESVQPVYKE---LSTQEYAIHDSHPEENTATDKKEQLYQAINRLSEIEKAIIIL 123
           I   RKE  +    +   L   E A  D  P+     ++K  L + +  ++ I++ I++L
Sbjct: 98  ITQYRKERRKRRLMDALSLDPVEEASEDKAPK----PEEKGGLDKWLVHVNPIDREILVL 153

Query: 124 -YLESYEYKEIAAVIGISESNVGVKINRIKKQL 155
            ++   E++EIA ++ +  S   ++  R   +L
Sbjct: 154 RFVAELEFQEIADIMHMGLSATKMRYKRALDKL 186