Pairwise Alignments

Query, 225 a.a., ABC transporter ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 241 a.a., Lipopolysaccharide export system ATP-binding protein LptB from Pseudomonas sp. RS175

 Score = 89.0 bits (219), Expect = 7e-23
 Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 19/236 (8%)

Query: 5   LEIDSIIKNFGTRQLLTDVYLKINTGDVIGLFGRNGTGKSVLMQIIFGTMKADRKFIRLD 64
           L+   + K++  RQ++ DV L I++G ++GL G NG GK+    +I G ++AD+  + +D
Sbjct: 4   LKAQHLAKSYKGRQVVRDVSLSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQADQGRVLID 63

Query: 65  ECKVLSAPYQHART---IAFLPQQG----YLPKHEKINKLVDCYLDANVVPYFYEDDEVA 117
           +  V   P  H R    I +LPQ+      L   + I  +++   D +      E + + 
Sbjct: 64  DLDVSHQP-MHGRAKAGIGYLPQEASIFRKLSVADNIMAILETRKDLDKAGRRQELESLL 122

Query: 118 QS-----CMERRVSQLSGGERRYLEAKLLLLGNAKFVLLDEPF---DYLSFHLVDKLIGL 169
           Q        +     LSGGERR +E    L  + KF+LLDEPF   D +S   + ++I  
Sbjct: 123 QEFHISHIRDNLGMSLSGGERRRVEIARALATSPKFILLDEPFAGVDPISVGDIKQIIHH 182

Query: 170 IKKHSEEKGIVIADHNYEKVLEVVNRLVLIREGVLMELTDKRGLVEQGYLLDESYL 225
           +K  ++  G++I DHN  + L++     ++ +G L+   D   ++    L+ E YL
Sbjct: 183 LK--AKGIGVLITDHNVRETLDICETAYIVNDGQLIAEGDATTIL-ANELVKEVYL 235