Pairwise Alignments

Query, 897 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1124 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 93.6 bits (231), Expect = 6e-23
 Identities = 93/326 (28%), Positives = 157/326 (48%), Gaps = 42/326 (12%)

Query: 22  LITAQAYAQNANARLTITLRNATLKEFVKLIENSTGYSFIYSEE-ISISHKINLKVKDMP 80
           ++   +  ++ N  L++    AT KE  + IE  TG+ F+Y  + + ++    ++ +D+ 
Sbjct: 39  MLAMHSQGKDLNMTLSVNYDQATAKEVFEHIETQTGFRFVYDRQAVDLADHFTIQEQDIR 98

Query: 81  LHEILDLVFKDEPISYKFSERYILLQKKRVQKPVSRKF---TISGYVTDGTSSETLIGTN 137
           L+++L  + +  P+ +K  +  I ++ +        K    T++G VTD +  E L G +
Sbjct: 99  LYDLLIKISQSSPLRFKQVDNQINVRIEENPSSQDEKMVDITLTGKVTD-SEGEPLPGAS 157

Query: 138 IIESHQYQGTTTNPYGFYSITLPEGETELRFSYLGYTTETHHFTLAQDTLLNIRMKGN-A 196
           I+      GT T+  G YSI +PEG T L  SY+G+  +T    +   T LNI ++ + A
Sbjct: 158 IMVDGTQNGTVTDLNGQYSIEVPEGAT-LTVSYIGF--QTKRVDVGNQTTLNIVLESDLA 214

Query: 197 QLEEVVVVS----DKAEAGTVATQMGAVEIPMVQIKNTPSILGESDVMKAIQLMPGVQAG 252
            L+EVVVV      K +     + +G+ EI  V         G ++ MKA+Q      AG
Sbjct: 215 GLDEVVVVGYGEIKKKDLTGAVSSIGSREINSV---------GATNPMKALQ---ANAAG 262

Query: 253 VD-----GSAG----LYIRGGSPDQNLILLDGTPVYNVDH-MFGFFSVFTPEAIKKVTLF 302
           V+     GS G    + IRG +      L  G P+Y VD  M        P  I+++ + 
Sbjct: 263 VNITQRTGSVGSGFDIQIRGANS-----LTGGNPLYVVDGVMTDNIDFLNPNDIERIDIL 317

Query: 303 K-SSFPARFGGRLSS-VIDVRTNDGD 326
           K +S  A +G R S+ V+ V T  G+
Sbjct: 318 KDASSTAIYGSRGSNGVVIVTTRSGE 343