Pairwise Alignments

Query, 420 a.a., putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 400 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

 Score =  118 bits (295), Expect = 4e-31
 Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 45  KDFVVVIDAGHGGHDPGAIG-KISKEKNINLNVALKLGNLIKKNCD-DVKVIYTRSRDVF 102
           +D +VV+D GHGG DPGA+G K  +EK++ L++A  L   +K+    DVK++  R+ D F
Sbjct: 154 RDIIVVVDPGHGGKDPGAVGSKGQREKDVVLSIAQLLAKRLKREKGFDVKLV--RNDDFF 211

Query: 103 IPLDRRAEIANNAKADLFISVHTNALAKNRTAKGASTWTL--GLAKSDANLEVAKRENSV 160
           +PL +R EIA+   AD+FISVH +A A   TA GAS + L  G A S     +A+REN  
Sbjct: 212 VPLRKRVEIAHKHNADMFISVHADA-APRVTASGASVYALSEGGATSATARFMAQRENGA 270

Query: 161 ILYESDYQTRYAGFNPNSAESYIIFEFMQDKYMEQSVHLASLVQKQFRHTCKRVDRGVHQ 220
            L  +         +P  A   +I +   +  +  S+ L + +            R V Q
Sbjct: 271 DLLGATRLLNLKDKDPMLAG--VILDMSMNATIASSLQLGNSILGSLEGITSLHQRRVEQ 328

Query: 221 AGFLVLKASAMPSILVELGFISTPEEERYLNSEAGANTMAKGIYHAFLNY 270
           AGF VLK+  +PSILVE GFIS   +   L +      +A G++     Y
Sbjct: 329 AGFAVLKSPDVPSILVETGFISNARDSARLVTARHQQAVADGLFEGLKKY 378