Pairwise Alignments

Query, 420 a.a., putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 418 a.a., N-acetylmuramoyl-L-alanine amidase from Serratia liquefaciens MT49

 Score =  122 bits (307), Expect = 2e-32
 Identities = 87/225 (38%), Positives = 123/225 (54%), Gaps = 17/225 (7%)

Query: 45  KDFVVVIDAGHGGHDPGAIGKI-SKEKNINLNVALKLGNLIKKNCDDVKVIYTRSRDVFI 103
           +  V+++D GHGG DPGAIGK  ++EK+I L +A +L  LIK+   ++KV  TR+ DVFI
Sbjct: 186 RPIVIMLDPGHGGEDPGAIGKFKTREKDIVLQIARRLSTLIKRE-PNMKVFMTRNEDVFI 244

Query: 104 PLDRRAEIANNAKADLFISVHTNALAKNRTAKGASTWTLGL--AKSDANLEVAKRENSVI 161
           PL  R   A   +ADLF+S+H +A   NR A+G+S + L    A S A   +A+ +N   
Sbjct: 245 PLKVRVAKARKQRADLFVSIHADAFT-NRAARGSSVFALSTKGATSSAAKFLAQTQN--- 300

Query: 162 LYESDYQTRYAGFNPNSAESYI---IFEFMQDKYMEQSVHLASLVQKQFRHTCKRVDRGV 218
             ESD      G    S + Y+   +F+ +Q   +  S+     V  +     +     V
Sbjct: 301 --ESDL----IGGVSKSGDRYLDHTMFDLLQTATINDSLKFGKEVLNRMGKINRLHKNRV 354

Query: 219 HQAGFLVLKASAMPSILVELGFISTPEEERYLNSEAGANTMAKGI 263
            QAGF VLKA  +PSILVE  FIS  EEER L +      +A+ I
Sbjct: 355 DQAGFAVLKAPDIPSILVETAFISNIEEERKLRTTHFQQQVAESI 399