Pairwise Alignments

Query, 420 a.a., putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 598 a.a., N-acetylmuramoyl-L-alanine amidase AmiB from Serratia liquefaciens MT49

 Score =  108 bits (271), Expect = 3e-28
 Identities = 100/342 (29%), Positives = 159/342 (46%), Gaps = 40/342 (11%)

Query: 44  GKDFVVVIDAGHGGHDPGAIGKIS-KEKNINLNVALKLGNLIKKNCDDVKVIYTRSRDVF 102
           G   VV IDAGHGG DPGAIG    KEKN+ + +A +L  L+  +    K + TR+ D F
Sbjct: 210 GDRVVVAIDAGHGGQDPGAIGPNGLKEKNVTIAIARRLQALLDAD-PQFKPVLTRNGDYF 268

Query: 103 IPLDRRAEIANNAKADLFISVHTNALAKNRTAKGASTWTLGLAKSDAN----LEVAKREN 158
           I +  R+++A    A++ +S+H +A A NR+A GAS W L   ++++     LE  ++++
Sbjct: 269 ISVMGRSDVARKQGANVLVSIHADA-APNRSANGASVWVLSNRRANSEMAGWLEQHEKQS 327

Query: 159 SVILYESDYQTRYAGFNPNSAESYIIFEFMQDKYMEQSVHLASLVQKQFRHTCKRVDRGV 218
            ++    D        +P  +++ +  +F   + +   V +  L Q Q   +  +  R  
Sbjct: 328 ELLGGAGDLLANSQA-DPYLSQAVLDLQFGHSQRVGYDVAVKVLQQLQSVGSLHK--RRP 384

Query: 219 HQAGFLVLKASAMPSILVELGFISTPEEERYLNSEAGANTMAKGIYHAFLNYKREQEIRL 278
             A   VL++  +PS+LVE GFIS   EER L S A    +A+ I++    Y     ++ 
Sbjct: 385 EHASLGVLRSPDIPSLLVETGFISNSTEERLLGSSAYQEKIARAIHNGLRGYFLAHPLQ- 443

Query: 279 TGASKTIIPTEEPATSAPEQRELMAEASTTPATATKTAPKRPIVSESATNDSEITFKIQI 338
                        A    E R L   A+   +T   + P  PIVS + +    I+ K QI
Sbjct: 444 -------------ADPKVENRPLDVAAAVNSSTQDVSQP-APIVSSAGSR--RISGKTQI 487

Query: 339 LTSSKPLTKNDKRLKGLKDVDYYKEKGLYKYTYGASSDYNKV 380
                 + K  + L G+ D         Y  T  A  D NK+
Sbjct: 488 -----HVVKRAETLSGIAD--------SYGTTMAALRDLNKL 516