Pairwise Alignments

Query, 420 a.a., putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 445 a.a., N-acetylmuramoyl-l-alanine amidase II from Escherichia coli BL21

 Score =  105 bits (262), Expect = 3e-27
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 14/234 (5%)

Query: 44  GKDFVVVIDAGHGGHDPGAIGKI-SKEKNINLNVALKLGNLIKKNCDD--VKVIYTRSRD 100
           G   ++ IDAGHGG DPGAIG   ++EKN+ + +A KL  L+    DD   K + TR  D
Sbjct: 189 GDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLN---DDPMFKGVLTRDGD 245

Query: 101 VFIPLDRRAEIANNAKADLFISVHTNALAKNRTAKGASTWTLGLAKSDAN----LEVAKR 156
            FI +  R+++A    A+  +S+H +A A NR+A GAS W L   ++++     LE  ++
Sbjct: 246 YFISVMGRSDVARKQNANFLVSIHADA-APNRSATGASVWVLSNRRANSEMASWLEQHEK 304

Query: 157 ENSVILYESDYQTRYAGFNPNSAESYIIFEFMQDKYMEQSVHLASLVQKQFRHTCKRVDR 216
           ++ ++    D        +P  +++ +  +F   + +   V  A+ +  Q +   +   R
Sbjct: 305 QSELLGGAGDVLANSQS-DPYLSQAVLDLQFGHSQRVGYDV--ATSMISQLQRIGEIHKR 361

Query: 217 GVHQAGFLVLKASAMPSILVELGFISTPEEERYLNSEAGANTMAKGIYHAFLNY 270
               A   VL++  +PS+LVE GFIS   EER L S+     +A+ IY    NY
Sbjct: 362 RPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNY 415