Pairwise Alignments

Query, 1042 a.a., cation efflux system protein, AcrB/AcrD/AcrF family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1045 a.a., cation transporter from Pseudomonas simiae WCS417

 Score =  588 bits (1517), Expect = e-172
 Identities = 341/1050 (32%), Positives = 601/1050 (57%), Gaps = 35/1050 (3%)

Query: 1    MLNKIIHYSLHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEANGMAAEE 60
            M  ++I +++  R++VL A +L+   G  +     +D  PD+    V I + A G +  E
Sbjct: 1    MFERLIQFAIEQRIIVLLAVLLMAGVGIASYQKLPIDAVPDITNVQVQINSAAAGFSPLE 60

Query: 61   VEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAVVSES 120
             EQ +TFP+ETA+ G  G+++ RS S +G S V V F  GTD++ ARQ+V+E+L V  E 
Sbjct: 61   TEQRITFPIETAMAGLPGLQQTRSLSRSGLSQVTVIFKDGTDLFFARQLVNERLQVAREQ 120

Query: 121  LPVNVGKPTLGPQSSILGEMLIVGLTA-------DST--SMLDLRTIADWTIRPRLLSTG 171
            LP+ + +  +GP S+ LGE+ +  + A       D T  +  DLR I DW I+P+L +  
Sbjct: 121  LPLGI-ETAMGPISTGLGEIFLWTVEAKEGARKDDGTPYTPTDLRVIQDWIIKPQLRNVP 179

Query: 172  GVAQVAVLGGDIKEYQIQLDPERMRHYGVSMGEVMAVTQDMNLNANGGVLYEFGNEYIAR 231
            GVA++  +GG  KEYQI  DP+R+  Y +++ +++   +  N N   G +   G + + R
Sbjct: 180  GVAEINTIGGFAKEYQIAPDPKRLAAYNLTLNDLVTALERNNANVGAGYIERSGEQLLIR 239

Query: 232  GVLSTPKVEELGKAVVKTVNNFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQP 291
                   +E++   V+ + +  P+ + ++A V+IG +  + G A+E G+  VL TV    
Sbjct: 240  APGQLASIEDIANIVITSSDGTPIRVRNVAQVEIGREL-RTGAATENGREVVLGTVFMLI 298

Query: 292  ATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIV 351
              ++  ++  +   L+ + ++LP  V V+  ++ ++  +E +I  VKK+LFEG + VV V
Sbjct: 299  GENSRSVSQAVAKKLEAINRSLPEGV-VAVTVYDRTNLVEKAISTVKKNLFEGALLVVAV 357

Query: 352  LFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVE 411
            LFLFL N+R  LI+ + +PL++L +   +    ++ N MSLG  A+  G +VD A+V VE
Sbjct: 358  LFLFLGNIRAALITAMVIPLAMLFTFTGMFTNKVSANLMSLG--ALDFGIIVDGAVVIVE 415

Query: 412  NVYKRLR--ENRQKAEAERFSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGR 469
            N  +RL   ++R      R   L  VF A+KE R  ++   LII+V ++P+F L+G+ G+
Sbjct: 416  NAIRRLAHAQHRHGRLLTRSERLHEVFAAAKEARRALIFGQLIIMVVYLPIFALTGVAGK 475

Query: 470  MLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKESFVARWMKGIYEKALTW 529
            M  P+    ++AL  + ++++T  P   + L  + K  +E  E+ V R  + +Y   L W
Sbjct: 476  MFHPMAFTVVIALLGAMILSVTFVPAAIA-LFVTGKVKEE--ENLVMRSARRVYAPVLDW 532

Query: 530  VLAHKRVTLGSTIVLFLIALGVFFT-LGRSFLPSFNEGSFTINISSLPGISLEESNKMGH 588
            V+A +    G   VL ++A GV  + +G  F+PS +EG F      +PG SL +S +M  
Sbjct: 533  VMARRPWVFGLA-VLTIVASGVVASRMGSEFIPSLSEGDFAQQALRVPGTSLTQSVQMQQ 591

Query: 589  RAEELLLT-IPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKD------RPRSELVAE 641
            + E+ L+  +PEI+ V  +TG AE+    +  N+S+     + KD      + R  L+A+
Sbjct: 592  QLEKTLMAQVPEIERVFARTGTAEIASDPMPPNISDSYVMLKPKDQWPDPRKSRETLIAD 651

Query: 642  VREKLGTITGANIEIGQPISHRIDAMLSGTKANIAIKLFGDDLNKMFSLGNQIKGAISDI 701
            ++     + G+  E+ QPI  R + ++SG ++++A+K+FGDD++ +     +I   +  +
Sbjct: 652  IQRASAIVPGSAYELSQPIQLRFNELISGVRSDVAVKVFGDDMDVLNKTAGEIAETLQKL 711

Query: 702  PGIADLNVEQQIERPQLKIQPKREMLAKFGITLPEFSEYVNVALAGKVISQVYEQGKSFD 761
             G +++ VEQ    P L I   R+  A+FG+ + +  + + VA+ G+    +YE  + FD
Sbjct: 712  GGASEVKVEQTSGLPVLTINIDRDKAARFGLNVGDVQDTLAVAVGGRQAGTLYEGDRRFD 771

Query: 762  LIVKVKDDARDEMEKIRNLMVDTNDGRK-----VPLNYVAEVVSSMGPNTINRENVKRKI 816
            ++V++ D  R +++ +  L++            + L+ VA +   +GPN I+REN KR +
Sbjct: 772  MVVRLSDALRTDIDGLSRLLIPVPGNASGQLGFIALSQVASLDLVLGPNQISRENGKRLV 831

Query: 817  VISANVADRDLRSVVNDIQKQVDATIQLPEGYHIEYGGQFESEQAASRVLALTSFMSIVI 876
            ++SANV  RD+ S V + +  + A +++P GY   +GGQFE  + AS  L +   +++++
Sbjct: 832  IVSANVRGRDIGSFVEEAEAAILAQVKVPAGYWTTWGGQFEQLKEASERLRIVVPVALLL 891

Query: 877  IFLLLYHEFRSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGM 936
            +F LL+  F ++K+  ++   +P AL GG+ AL +    +SI A +GFI+L G+A  NG+
Sbjct: 892  VFGLLFMMFNNLKDGLLVFTGIPFALTGGIMALWLRDIPLSISAGVGFIALSGVAVLNGL 951

Query: 937  LLISHYNHLQQVEGLNVYDSVVQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSP 996
            ++I+   +L++ EG ++  ++ +G+L RL P+LMTAL ++L  IP+AL     G E+Q P
Sbjct: 952  VMIAFIRNLRE-EGRSLSMAINEGALTRLRPVLMTALVASLGFIPMALATG-TGAEVQRP 1009

Query: 997  MAKVILGGLLTSTFLNGFIVPIVYLMMHRQ 1026
            +A V++GG+++ST L   ++P +Y   HR+
Sbjct: 1010 LATVVIGGIISSTLLTLLVLPALYQWAHRK 1039