Pairwise Alignments

Query, 380 a.a., multidrug efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  140 bits (354), Expect = 5e-38
 Identities = 108/357 (30%), Positives = 173/357 (48%), Gaps = 22/357 (6%)

Query: 22  AGCK--QAPPTQMETGYEVMTVSPTDRMISSAYSATIRGRQDIDIYPQVGGTLTKVSVTE 79
           +GCK  +A P        V+T+ P    ++S         +  ++ PQV G + K    E
Sbjct: 21  SGCKKEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIILKRLFKE 80

Query: 80  GQRVKSGQTLFIIDQVPYEAALQTAVANVESAKASLATAQLTYDSKEELYKENVVSAFDL 139
           G  VK GQ L+ ID   YEA L  A AN+      LAT  L  +  ++L  E  VS    
Sbjct: 81  GSEVKEGQQLYQIDPAVYEATLANAKANL------LATRSLA-ERYKQLIDEQAVS---- 129

Query: 140 STAKNSLLAAKAQLAQAKAQEVSARNNLSYTVVKSPADGVVGTLPYRVGALVSSSIPEPL 199
              K     A A+  QA+A   SA+ +L YT V +P  G +G   +  GALVS+   + +
Sbjct: 130 ---KQEYDDANAKRLQAEASLKSAQIDLRYTKVLAPISGRIGRSSFTEGALVSNGQTDAM 186

Query: 200 TTVSDNSDMYVYFSMTENQLLGLIR--QYGSKDEALKSMPAIDLQLNDKSAYPEQGQIES 257
            T+     +YV  + +  +LL L R  + G   +A  +  ++ L L D S + ++G++E 
Sbjct: 187 ATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLFKQEGRLEF 246

Query: 258 ISGVIDRSTGTVSLRAVFPNKDGLLHSG--GAGNVVIPVQKTGALVIPQGATFEIQDKRY 315
               +D +TG+V+LRA+FPN D  L  G      +   V     L   QG T +++    
Sbjct: 247 SEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTRDLKGAPT 306

Query: 316 VYKV-VDGKAQSSQVQVTRVNGGREFIVDEGLSPGDVIVAEGVGLLREGTPIKAKTA 371
              V  + K +  Q++ +R  G  +++++EGL+PGD ++ EG+  +R G  +K   A
Sbjct: 307 ALVVNQENKVELRQLKASRTLGS-DWLIEEGLNPGDRLITEGLQYVRPGVEVKVSDA 362