Pairwise Alignments

Query, 380 a.a., multidrug efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 382 a.a., MexE family multidrug efflux RND transporter periplasmic adaptor subunit from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  186 bits (473), Expect = 7e-52
 Identities = 127/364 (34%), Positives = 187/364 (51%), Gaps = 11/364 (3%)

Query: 12  LLLLGCLVAAAGCKQAPPTQMETGYEVMTVSPTDRMISSAYSATIRGRQDIDIYPQVGGT 71
           ++L  C    AG +Q  P  M        VS         Y  T+   Q++++ PQV G 
Sbjct: 16  VILSSCGGDEAGQQQMNPAAMAVPVNTYQVSEQSVTGKDTYPGTVVPLQEVELRPQVSGY 75

Query: 72  LTKVSVTEGQRVKSGQTLFIIDQVPYEAALQTAVANVESAKASLATAQLTYDSKEELYKE 131
           +T + V +GQRVK GQ L+ IDQ  Y+A LQ A AN++SAKA+LA  Q   +  E L + 
Sbjct: 76  ITNIYVEDGQRVKQGQKLYEIDQSKYQAGLQQARANLQSAKANLARVQKDLERYERLAER 135

Query: 132 NVVSAFDLSTAKNSLLAAKAQLAQAKAQEVSARNNLSYTVVKSPADGVVGTLPYRVGALV 191
           + ++   +  A+  +  AKAQ+A A+AQ  SA  ++ Y V+ +P  G +G    RVGA V
Sbjct: 136 DAIAKQQVDYARTEVQTAKAQVASAEAQVQSASTDVGYAVINAPFSGTIGISQVRVGAQV 195

Query: 192 SSSIPEPLTTVSDNSDMYVYFSMTENQLLGLIR-QYGSKDEALKSMPAIDLQLNDKSAYP 250
           S   P  L T+S    + V F++ E ++   ++ Q G++ ++L       L LN+   YP
Sbjct: 196 SPGQP-LLNTISSMDPIAVDFAINEQEIPRFVKLQQGNQPDSL-----FTLTLNNGEKYP 249

Query: 251 EQGQIESISGVIDRSTGTVSLRAVFPNKDGLLHSGGAGNVVIPVQKTG-ALVIPQGATFE 309
             G++ +I   I R +GT ++R  FPN + +L  G    V +  Q  G  LVIP  A  E
Sbjct: 250 HNGKLLAIDRAIGRQSGTTTVRVQFPNPNAVLIPGMTVTVNVLNQDIGDQLVIPNKAVAE 309

Query: 310 IQDKRYVYKVVDGKAQSSQVQV-TRVNGGREFIVDEGLSPGDVIVAEGVGLLREGTPIKA 368
              + YVY V         VQ+ TRVNG    +V EGL  G  IV EG+  LR+G  ++ 
Sbjct: 310 QLGEFYVYVVQGDSVVQQNVQLGTRVNG--NVVVREGLKEGQQIVVEGIQRLRQGAKVQV 367

Query: 369 KTAQ 372
              Q
Sbjct: 368 GAPQ 371