Pairwise Alignments

Query, 380 a.a., multidrug efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 408 a.a., efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score =  137 bits (345), Expect = 5e-37
 Identities = 109/362 (30%), Positives = 179/362 (49%), Gaps = 20/362 (5%)

Query: 21  AAGCKQAPPTQMETGYEVMTVSPTDRMISSAYSATIRGRQDIDIYPQVGGTLTKVSVTEG 80
           AA  + AP T       V T++  +  + S++S  +R     +I P+V G LT+V + +G
Sbjct: 52  AAAAQAAPVT-------VQTMALRNVQVWSSFSGRMRAVDFAEIRPEVSGRLTQVRINDG 104

Query: 81  QRVKSGQTLFIIDQVPYEAALQTAVANVESAKASLATAQLTYDSKEELYKENVVSAFDLS 140
           Q VK+G  LF+ID  P+EAAL  A AN+ +A+ +   A+   D    L K   ++     
Sbjct: 105 QTVKAGDVLFVIDPAPFEAALAKAEANLATARTNAVFARTELDRAVNLIKTEAIAQRLYD 164

Query: 141 TAKNSLLAAKAQLAQAKAQEVSARNNLSYTVVKSPADGVVGTLPYRVGALVSSSIPEP-L 199
              N+   + + +  A+A+   A  NL +  VK+P  G V      +G +V +    P L
Sbjct: 165 ERANADKVSHSAVLAAEAELKQAHINLDHAYVKAPIAGRVSRAEITLGNVVQAGPGAPLL 224

Query: 200 TTVSDNSDMYVYFSMTENQLL-GLIRQYGSKDEALKSMPAIDLQLNDKSAYPEQGQIESI 258
           T++  N  +Y  F + E   + G+  Q GS+D+  + +P + + +    A+P  G I+S 
Sbjct: 225 TSIVSNDGIYADFEVDEQTYMKGIRTQDGSRDKE-RRIP-VQITVRGDEAHPYLGTIQSF 282

Query: 259 SGVIDRSTGTVSLRAVFPNKDGLLHSGGAGNVVIPVQKTG---ALVIPQGATFEIQDKRY 315
              ID ++GT+  RA F N DG L  G    V + V   G   AL++ + A    Q K++
Sbjct: 283 DNRIDTASGTIRARARFDNGDGALMPGMF--VSVKVASGGDEPALLVQERAIGSDQSKKF 340

Query: 316 VYKV-VDGKAQSSQVQV-TRVNGGREFIVDEGLSPGDVIVAEGVGLLREGTPIKAKTAQA 373
           VY V  DGK    +V +  +V+G R  IV  GL  G+ ++ +G+  +R    +  + A  
Sbjct: 341 VYVVGDDGKVAYREVGLGPQVDGSR--IVLAGLKAGEKVIVDGLQHVRPNMAVTVQEASL 398

Query: 374 ST 375
            T
Sbjct: 399 GT 400