Pairwise Alignments

Query, 380 a.a., multidrug efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 380 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

 Score =  163 bits (412), Expect = 8e-45
 Identities = 115/375 (30%), Positives = 179/375 (47%), Gaps = 6/375 (1%)

Query: 3   KKVCKMKQGLLLLGCLVAAAGCKQAPPTQMETGYEVMTVSPTDRMISSAYSATIRGRQDI 62
           KKV  +   LLL  C   + G      +  E G   +   P    +SS  +  +      
Sbjct: 4   KKVLLVSLSLLLAACDGQSGGAPAGAGSVQEVGVATLQAQPVT--LSSDLTGRVNATMTS 61

Query: 63  DIYPQVGGTLTKVSVTEGQRVKSGQTLFIIDQVPYEAALQTAVANVESAKASLATAQLTY 122
           D+ PQV G + K   TEG  VK+GQ L+ ID   Y+A+   A A ++SA+A++ +++L  
Sbjct: 62  DVRPQVDGIIKKRLFTEGAEVKAGQVLYQIDPATYQASYDQAAAQLKSAEATVKSSRLKA 121

Query: 123 DSKEELYKENVVSAFDLSTAKNSLLAAKAQLAQAKAQEVSARNNLSYTVVKSPADGVVGT 182
                L KEN VS  D   A  + L A A +AQ +A   SA+ NL+YT V++P  G +G 
Sbjct: 122 QRYAALVKENGVSKQDADDAMATYLEAVAAVAQYQASLESAKINLAYTQVRAPISGRIGI 181

Query: 183 LPYRVGALVSSSIPEPLTTVSDNSDMYVYFSMTENQLLGLIRQYGSKDEALKSMPAIDLQ 242
                GALV++S  + L T+     +YV  + + +QLL L +Q  S       +  + ++
Sbjct: 182 SSVTPGALVTASQTDALATIRALDPIYVDLTQSSSQLLKLRKQQASLQR--DDVTPVAIK 239

Query: 243 LNDKSAYPEQGQIESISGVIDRSTGTVSLRAVFPNKDGLLHSGGAGNVVIP--VQKTGAL 300
           L D + Y   G++E     +D STG+V+LRAVFPN +  L  G   +  +   V   G L
Sbjct: 240 LEDGTPYTHPGKLELTEVAVDESTGSVTLRAVFPNPEHELLPGMYVHATVDNGVNPKGIL 299

Query: 301 VIPQGATFEIQDKRYVYKVVDGKAQSSQVQVTRVNGGREFIVDEGLSPGDVIVAEGVGLL 360
              QG T   + +     V        +  +T    G  ++V +GL+ GD ++ EG   +
Sbjct: 300 APQQGITRNAKGEATALVVNAQNKVEQRTIITEQVIGSNWLVSKGLNAGDRLIVEGTNKV 359

Query: 361 REGTPIKAKTAQAST 375
             G  +KA   +  T
Sbjct: 360 AAGIEVKAVDVKQPT 374