Pairwise Alignments

Query, 380 a.a., multidrug efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 395 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

 Score =  139 bits (349), Expect = 2e-37
 Identities = 110/362 (30%), Positives = 173/362 (47%), Gaps = 14/362 (3%)

Query: 13  LLLGCLVAAAGCKQAPPTQMETGYEVMTVSPTDRMISSAYSATIRGRQDIDIYPQVGGTL 72
           LL GC  +AA    APP    +  +V+ + P  +     ++  I   Q + + P+V G +
Sbjct: 33  LLAGCDNSAAK-NAAPPPPAVSAADVV-IKPISQW--DTFNGRIEAVQSVQLRPRVSGYI 88

Query: 73  TKVSVTEGQRVKSGQTLFIIDQVPYEAALQTAVANVESAKASLATAQLTYDSKEELYKEN 132
            KV+ TEG  VK GQ LF ID   Y AA + A A +  A+   A A+      E+L    
Sbjct: 89  DKVNYTEGDEVKKGQVLFTIDDRTYRAAREQAQAELVRARNQAALARSESSRTEKLIGSQ 148

Query: 133 VVSAFDLSTAKNSLLAAKAQLAQAKAQEVSARNNLSYTVVKSPADGVVGTLPYRVGALVS 192
            +S       ++S   A++ +  A+AQ   A+ NL +T V +P DG         G LV+
Sbjct: 149 AISTEVWEQRRSSAAQAQSNVLAAQAQFDMAQLNLDFTRVIAPIDGRASRAMITAGNLVT 208

Query: 193 S-SIPEPLTTVSDNSDMYVYFSMTENQLLGLIRQYGSKDEALKSMPAIDLQLNDKSAYPE 251
           +      LTT+     +YVYF + E   L    +Y +       +P + + L  +  YP 
Sbjct: 209 AGDSASVLTTLVSLDKVYVYFDVDEATFL----RYQNDGRRTAKLP-VKVGLVGEDGYPH 263

Query: 252 QGQIESISGVIDRSTGTVSLRAVFPNKDGLLHSGGAGNVVIPVQKT-GALVIPQGATFEI 310
           QG ++     ++  TGT+ +RA+  N +     G    V +P      A++I   +    
Sbjct: 264 QGVVDFTDNQLNAGTGTIRMRALLENAERRFTPGLFARVQMPGSAVFNAMLIDDKSVMTD 323

Query: 311 QDKRYVYKV-VDGKAQSSQVQVTRVNGGREFIVDEGLSPGDVIVAEGV-GLLREGTPIKA 368
           QD+++VY V  DGKAQ   ++V RV  G   IV +GLS GD ++ +G+  +   G P+ A
Sbjct: 324 QDRKFVYIVDKDGKAQRRDIEVGRVADGLR-IVRKGLSAGDRVIVDGMQKVFMPGMPVAA 382

Query: 369 KT 370
           KT
Sbjct: 383 KT 384